Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0092 ATGGGTCGGAAACACGACGCCGTTTTGGCCAGCGAACCTGTCGCCGAAGAAGCCCCCTGCAGCCCTGAGCTCGATTCCGAGAAGAAGAAGAAGAAGAAAAAGAAGAACAAAAACAAAGACAAGCACCAAACCGAAAGCAGCCCCAAACGAAAGCTCGACGAACACGACCCCCAAAACGGCACCGAATCGAAGAAGAAAAAGAAGAAGCACCACGAGTCCAAGGGGAACGCCGAGGAAACCAACGGCGATAGCAACAACAACAACGGCAATGGTGCTAATCGCGAGGAAACGGCGACGGATGGGTCTGTTGTGGTCACCGGTAACAATGCGGGAGAGGCGAAATACGCCGCGGTGAAGAGCTTCGCGGATTCGGGGCTGCCGGAGAACGTGCTGGAGTGCTGCAAGGGTTTCGAGAAGCCTTCTCCGATTCAGTCCCGGGCGTGGCCTTTCTTATTGGACGGTCGTGATTTGATTGGAATTGCTGCCACTGGCTCAGGGAAGACGTTGGCGTTCGGCATACCGGCGGTTATGCATGTTTTGGGGAAGCGGAAGGGGAAAAGTTCCAAGGGACGAAACCCTCTCGGCCTCGTGCTCTCACCCACTAGAGAGCTAGCTCAACAGATATCAGATGTCATGTGTGATGCTGGTAGGTCTTGTGGTGTGCAATCAATCTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCCTCACTAAAATCTGGCATTGACATTGTCATTGGAACCCCTGGTCGTATCCAGGATCTGATTGAAATGGGTATCTGTTGCCTAAAAGAAGTATCTTTTGTGGTACTTGATGAAGCTGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAAACGTGTTCTGATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGCCAGTTCATTACTTGGCACAGGAGTTTATGGATCCTAATCCTGTAAAAGTTGTTGTAGGCTCAGAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGACCGTTCTCGTGATAAGCGCCTAGTTGCTTTACTGGAAAAGTACCACAAATCTCAGAGGAATCGAGTATTGGTTTTTGTTTTGTACAAATTGGAAGCCAAACGAGTTGAAAATATGCTTCAAGAAGGGGGTTGGAAGGTTGTATCAATACACGGGGACAAAGCCCAACATGATCGCACAAAGGCACTCTCATTGTTCAAGAATGCAAGCTGTCCTTTGATGATTGCTACTGATGTGGCCGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATAAACTATAGTTTTCCTCTGACTACAGAAGATTATGTTCATAGAATTGGGCGAACTGGACGAGCTGGTAAAAAAGGTGTTGCCCATACATTCTTTATGCAGCAGAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTCAAAAGAAAACATTTGACGACTCTGATGAAGACTAA 1614 0.474 MGRKHDAVLASEPVAEEAPCSPELDSEKKKKKKKKNKNKDKHQTESSPKRKLDEHDPQNGTESKKKKKKHHESKGNAEETNGDSNNNNGNGANREETATDGSVVVTGNNAGEAKYAAVKSFADSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVMHVLGKRKGKSSKGRNPLGLVLSPTRELAQQISDVMCDAGRSCGVQSICLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGICCLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSDRQMVMFSATWPLPVHYLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDKRLVALLEKYHKSQRNRVLVFVLYKLEAKRVENMLQEGGWKVVSIHGDKAQHDRTKALSLFKNASCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQQNKGLAGELVNVLREAGQIVPDALLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKKTFDDSDED* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0092 537 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 523 - -
Gso1g0092 537 SMART ultradead3 136 342 IPR014001 -
Gso1g0092 537 CDD SF2_C_DEAD 339 471 - -
Gso1g0092 537 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 148 325 IPR014001 -
Gso1g0092 537 Gene3D - 23 328 IPR027417 -
Gso1g0092 537 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 271 279 IPR000629 -
Gso1g0092 537 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 501 IPR001650 -
Gso1g0092 537 Pfam Helicase conserved C-terminal domain 353 462 IPR001650 -
Gso1g0092 537 SMART helicmild6 381 462 IPR001650 -
Gso1g0092 537 MobiDBLite consensus disorder prediction 1 96 - -
Gso1g0092 537 MobiDBLite consensus disorder prediction 40 63 - -
Gso1g0092 537 PANTHER BNAA08G07020D PROTEIN 26 523 - -
Gso1g0092 537 CDD DEADc 135 326 - -
Gso1g0092 537 Pfam DEAD/DEAH box helicase 142 308 IPR011545 GO:0003676|GO:0005524
Gso1g0092 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 475 IPR027417 -
Gso1g0092 537 MobiDBLite consensus disorder prediction 79 96 - -
Gso1g0092 537 Gene3D - 329 504 IPR027417 -
Gso1g0092 537 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 119 145 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0092 Gso-Chr1 1035604 1040280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0092 118 470 Eukaryotic Initiation Factors Gene Family AT3G19760 33.803 7.83e-57 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0092 K14811 - gmx:100305353 1014.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0092 1 1035604 1040280 Gso9g1741 9 41860013 41864347 GST