Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0090 ATGGCAGCTTGCACTGTCTACTCAACACAATCTCTGAGCACAAATTGCTCCATCTCAACCCCATCAAAGACGCAACTCAGTTTCTTCCACCAAAAGCAGGTAGTTTTCTGGAGGAACAGCAAGAAGGGCAGCAGCAGCAGCAGAAGAAGCTATGTGATAACATGTGCAGCAGGTGACTCACAGACAGTGGTGATTGGCCTGGCTGCAGACTCAGGGTGTGGGAAGAGCACCTTCATGAGGAGGCTGACCAGTGTGTTTGGAGGAGCAGCAGAGCCACCAAAGGGTGGCAACCCTGACTCCAACACTCTCATCAGTGACACCACCACTGTCATATGCTTGGATGATTACCACTCTTTGGACAGAACTGGAAGAAAGGAGAAGGGTGTCACTGCCCTTGACCCTAGAGCCAATGATTTTGATCTCATGTATGAACAAGTTAAAGCTCTTAAGGATGGAATTGCTGTTGAAAAACCAATCTACAACCATGTCACTGGTCTCTTGGATCCCCCTGAGCTCATTAAACCCCCCAAAATCTTAGTCATTGAAGGTTTGCACCCAATGTTTGATTCCCGTGTCAGAGATCTCTTGGACTTTAGCATCTACCTAGACATTAGCAATGAGGTCAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAGCGTGGACACAGTCTTGAAAGCATCAAGGCTAGCATTGAAGCAAGGAAGCCTGATTTTGAAGCATATATTGATCCACAAAAGCAATACGCAGATGCAGTGATAGAAGTGTTGCCAACGCAACTCATTCCAGATGACAACGAGGGTAAGATTTTGAGAGTGAGATTGATACAGAAAGAGGGGGTTAAGTACTTTAGCCCGGTTTACTTGTTTGATGATGGCTCTACCATTTCATGGATACCATGTGGAAGAAAGCTTACATGCTCCTACCCTGGCATCAAATTCTTCTATGGACCTGAGACTTACTACGGAAATGAGGTGTCAGTTGTAGAAATGGATGGACAATTTGACAGACTAGATGAACTAATATACGTTGAGAGCCACCTAAGCAACCTCTCTACAAAGTTCTATGGAGAGGTTACTCAACAGATGTTGAAGCATGCTGATTTTCCCGGCAGCAACAATGGAACAGGTCTCTTCCAAACCATAGTTGGTTTGAAGATAAGAGATCTATATGAGCAGCTAATAGCCAGCAAGGCTGAGACTCCAGTAGCTGCAAAAGCTTAG 1224 0.4526 MAACTVYSTQSLSTNCSISTPSKTQLSFFHQKQVVFWRNSKKGSSSSRRSYVITCAAGDSQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFEAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKYFSPVYLFDDGSTISWIPCGRKLTCSYPGIKFFYGPETYYGNEVSVVEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQLIASKAETPVAAKA* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0090 407 PANTHER URIDINE KINASE 6 406 - -
Gso1g0090 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 333 IPR027417 -
Gso1g0090 407 Pfam Phosphoribulokinase / Uridine kinase family 64 262 IPR006083 GO:0005524|GO:0016301
Gso1g0090 407 CDD PRK 64 353 - -
Gso1g0090 407 Gene3D - 59 294 IPR027417 -
Gso1g0090 407 PANTHER PHOSPHORIBULOKINASE 6 406 - -
Gso1g0090 407 ProSitePatterns Phosphoribulokinase signature. 213 226 IPR006082 GO:0005524|GO:0005975|GO:0008974
Gso1g0090 407 PRINTS Phosphoribulokinase family signature 69 86 IPR006082 GO:0005524|GO:0005975|GO:0008974
Gso1g0090 407 PRINTS Phosphoribulokinase family signature 178 196 IPR006082 GO:0005524|GO:0005975|GO:0008974
Gso1g0090 407 PRINTS Phosphoribulokinase family signature 213 230 IPR006082 GO:0005524|GO:0005975|GO:0008974
Gso1g0090 407 PRINTS Phosphoribulokinase family signature 231 254 IPR006082 GO:0005524|GO:0005975|GO:0008974
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0090 Gso-Chr1 1019551 1023939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0090 116 290 PRT Gene Family AT3G27440 26.404 1.39e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0090 K00855 - gmx:100777515 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0090 1 1019551 1023939 Gso1g0090 1 1019551 1023939 ECH
Gso1g0090 1 1019551 1023939 Gso9g1743 9 41878464 41882649 GST