Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0088 ATGGCAACAAACGCAAACTGCGAAATGCCCCTCACACACCACCCTCATTGGTTCTCTCCAAAATCCGGAATTTACCACAGCAAACACGCCCCCGTGGACCTTCCCAACGACCCTTTTCTCGACCTTGTTTCCTTCATTTTTTCCCACCGCCACAATGGGGTTTCGGCCCTCGTTGATTCTTCATCTGGGTGTTCCATTTCCTACCCAAAGTTGCTACCTTTGGTAAAATCCGTTGCTTCTGGTCTTCACAGAATGGGTGTTTCACAAGGTGACGTGGTTCTGCTTCTTCTCCCTAATTCCATTTACTATCCCATTGTGTTCTTGGCTGTTCTCTATATAGGTGCTATTGTTACACCCTTGAATCCTCTTAGTAGTGTCTATGAAATACGCAGGCAGGTTAGTGAGTGTGGTGTGAGTCTGGCTTTCACTGTGCCTGAAAATGAGAAGAAACTTGAGCCATTGGGAATTTCTGTTATTGCTGTGCCAGAAAATGAGAAGGGTTTGAAGGATGGTTGTTTTTCATGCTTTTGTGATTTGATTTCTTGTGACTTTGATTTGCCTAAGAGACCTGTTATTAAGCAGGATGACACTGCTGGGATACTGTATTCTTCAGGGACTACTGGTGTGAGCAAAGGGGTTGTTCTGTCCCACAAGAATCTTGTTGCTATGGTTGAGCTTTTTGTGAGGTTTGAAGCTTCTCAATATGAAGGCTCTTGCTTGAGGAATGTGTATCTGGCTGTTTTGCCGATGTTTCATGTGTATGGTTTGTCGCTGTTTGCTGTGGGATTGCTGTCTTTGGGTTCTACTGTTGTTGTGATGAGGAAATTTGACATTGATGAGGTTGTCAGGGTAATTGATGAATATAAAGTTACACACTTTCCTGTTGTTCCGCCGATGTTGACAGCATTGATAAAGAGGGCAAAGGGTGTCAATGGCGGTGAGTTTCAGAGTTTGGTACAAGTCTCCAGCGGTGCAGCACCTTTGAGCATGGGAGTTATTAATGAGTTCATCCGAGCTTTCCCTAATGTTGATTTTATACAGGGTTATGGAATGACTGAGTCAACTGCAGTAGGAACACGTGGATTCAATACTGAAAAGTTTCGCAATTATTCTTCAATAGGGTTATTGGCTCCAAACATGGAGGCAAAAGTGGTAGACTGGAATACTGGTGCATTTTTGCCCCCAGGCAGCAGTGGTGAGCTTCGGTTGAGAGGGCCTTCAATTATGACGGGATACTTGAATAATGAGGAAGTTACAATGTCAACAATTGATAAAGATGGTTGGTTACATACTGGAGATGTTGTTTATTTTGATCATGATGGGTATTTACACATATCTGACCGCTTGAAAGATATCATCAAATACAAAGGCTTTCAGATTGCTCCTGCCGATTTAGAAGCTGTGTTAATTTTGCATCCTGAAATAGTTGATGTTGCTGTTACACGTGCAATGGATGAAGAAACTGGGGAGATCCCAGTGGCATTTGTGGTCAGAAAGGTTGGAAGTGTGCTGTCTCCAAAGCATATTATGGATTTTGTTGCTGAGCAGGTTGCTCCATATAAGAAGGTTAGGAAAGTGTTCTTCACTGACAAGATACCAAGGTCTGCCACTGGGAAGATCCTACGAAAGCAGCTGAGGAATTACTTGACTTCTAATCTATAG 1662 0.4314 MATNANCEMPLTHHPHWFSPKSGIYHSKHAPVDLPNDPFLDLVSFIFSHRHNGVSALVDSSSGCSISYPKLLPLVKSVASGLHRMGVSQGDVVLLLLPNSIYYPIVFLAVLYIGAIVTPLNPLSSVYEIRRQVSECGVSLAFTVPENEKKLEPLGISVIAVPENEKGLKDGCFSCFCDLISCDFDLPKRPVIKQDDTAGILYSSGTTGVSKGVVLSHKNLVAMVELFVRFEASQYEGSCLRNVYLAVLPMFHVYGLSLFAVGLLSLGSTVVVMRKFDIDEVVRVIDEYKVTHFPVVPPMLTALIKRAKGVNGGEFQSLVQVSSGAAPLSMGVINEFIRAFPNVDFIQGYGMTESTAVGTRGFNTEKFRNYSSIGLLAPNMEAKVVDWNTGAFLPPGSSGELRLRGPSIMTGYLNNEEVTMSTIDKDGWLHTGDVVYFDHDGYLHISDRLKDIIKYKGFQIAPADLEAVLILHPEIVDVAVTRAMDEETGEIPVAFVVRKVGSVLSPKHIMDFVAEQVAPYKKVRKVFFTDKIPRSATGKILRKQLRNYLTSNL* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0088 553 Gene3D - 451 551 IPR045851 -
Gso1g0088 553 CDD 4CL 34 545 - -
Gso1g0088 553 Pfam AMP-binding enzyme C-terminal domain 465 539 IPR025110 -
Gso1g0088 553 Gene3D - 23 450 IPR042099 -
Gso1g0088 553 Pfam AMP-binding enzyme 50 455 IPR000873 -
Gso1g0088 553 SUPERFAMILY Acetyl-CoA synthetase-like 51 549 - -
Gso1g0088 553 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 12 551 - -
Gso1g0088 553 PANTHER 4-COUMARATE--COA LIGASE-LIKE 6 12 551 - -
Gso1g0088 553 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0088 Gso-Chr1 999449 1004919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0088 4 553 Monolignol Biosynthesis Gene Families AT4G19010 59.002 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0088 K01904 - gmx:100804808 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0088 1 999449 1004919 Gso1g0088 1 999449 1004919 ECH