Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0084 ATGGAGGGTGGTGGAAGAGAAGGTTATAATGGAGTCATCATGACGATGACACGAGACCCGAAGCCGAGGCTACGGTGGACGGCAGATCTCCATGACCGGTTTGTGGATGCAGTCACAAAGCTTGGTGGCCCCGATAAGGCGACTCCCAAGTCTGTTCTGAGGTTAATGGGCTTGAAAGGGCTGACACTATATCATTTGAAGAGCCATTTACAGAAGTATAGACTTGGACAGCAGGCTCAAAAACAAAATGAGGAAGTGCACAAAGAGAATAGTAGATGTTCGTATGTAAATTTTAGTAATCGTTCTTTGGCACCAAACACCAGTTACAGAGGTGACGATGAAGGGGGAGAAATCCCAATAGCAGAAGCATTGAGGTGTCAGATTGAAGTTCAAAAGAGATTGGAAGAGCAGCTAAAGGTACAGAAGAAATTGCAGATGAGAATAGAGGCACAAGGGAAGTATTTGCAATCGGTGTTAGAGAAAGCCCAGAGGAGCCTTTCCCTGGATGGACCAGGCAGTCTTGAAGCATCCAGAGCTGAGTTGACTGAATTCAACTCTGCTTTGTCAAATTTCATGGAAAATATGAATAAAGATAGCAAACAAAACATAATAGAAGTGAATAATTTTTATAGTAAGAGCCATGGCTCAGCTTTCTATAATCAGGAAGTAGGAAGAGAACAAAATAGGGACCAAAAGCCAAAGGTTGAAGGGGGTTCTATACAATTTGACTTAAACATCAAAGGTAGCAATGACCTTGTATCTGCAGGTGGGGCTGAAATGGATGCCAATATGGTTTCATCATATAGGGTATAA 813 0.4268 MEGGGREGYNGVIMTMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQAQKQNEEVHKENSRCSYVNFSNRSLAPNTSYRGDDEGGEIPIAEALRCQIEVQKRLEEQLKVQKKLQMRIEAQGKYLQSVLEKAQRSLSLDGPGSLEASRAELTEFNSALSNFMENMNKDSKQNIIEVNNFYSKSHGSAFYNQEVGREQNRDQKPKVEGGSIQFDLNIKGSNDLVSAGGAEMDANMVSSYRV* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0084 270 Pfam MYB-CC type transfactor, LHEQLE motif 119 164 IPR025756 -
Gso1g0084 270 Pfam Myb-like DNA-binding domain 24 74 IPR001005 -
Gso1g0084 270 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 21 76 IPR006447 GO:0003677
Gso1g0084 270 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 11 255 - -
Gso1g0084 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 78 IPR017930 -
Gso1g0084 270 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 11 255 IPR044848 GO:0003700
Gso1g0084 270 Coils Coil 121 151 - -
Gso1g0084 270 Gene3D - 20 78 - -
Gso1g0084 270 SUPERFAMILY Homeodomain-like 21 78 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0084 Gso-Chr1 965525 968558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0084 12 190 G2-like Transcription Factor Family AT3G24120 52.174 1.18e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso1g0084 Myb_DNA-binding 2.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0084 - - gmx:100810146 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0084 1 965525 968558 Gso1g0084 1 965525 968558 ECH
Gso1g0084 1 965525 968558 Gso9g1749 9 41950462 41953630 GST