Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0065 ATGAAAAAAACTACCTCATCATGTGACAAAATGCCAATCCTCTCTCTTCTCTCCTTCTTCCTCTTTCTCACCTATGCAAACTCTCAGTCTCAGTACTCTTTGCTGTATGATCAAGAACATGCAGTCCTATTGAGGATAAAGCAACACCTGCAAAATCCACCGTTCCTCAATCACTGGACCCCATCAAACTCTTCACATTGCACTTGGCCAGAGATCAGCTGCACCAATGGCTCAGTCACTTCACTGACTATGATCAACACCAACATCACTCAAACACTGCCACCTTTCCTATGTGACCTCACAAACCTCACACATGTTGATTTTCAGTGGAATTTCATTCCTGGTGAATTCCCAAAATATCTCTACAACTGCTCCAAGCTTGAGTACCTTGACCTCTCACAAAACTACTTTGTCGGTAAGATTCCTGATGATATTGACCACTTGGCTAGCCTGAGTTTTCTTAGCCTTGGTGGCAACAACTTCTCTGGTGACATTCCAGCCAGCATTGGGAGGTTAAAGGAGCTAAGAAGTCTTCAACTTTATCAGTGTCTTCTCAATGGTACTTTCCCTGCCGAAATTGGCAACTTGTCCAACCTTGAGTCCTTGTATGTGTTCTCAAACCACATGCTCCCTCCCACAAAGTTGCCATCAAGCTTGACCCAGTTGAACAAATTGAAGGTCTTTCATATGTATGAATCCAGCTTGGTAGGGGAAATCCCTGAAGCCATTGGACACATGGTGGCATTGGAGGAATTGGATTTGTCAAAAAATGATTTAAGTGGACAAATTCCCAATGATTTGTTCATGCTGAAAAATCTGAGCATACTGTATCTTTACCGGAACAGCCTTTCTGGGGAGATACCTGGAGTGGTTGAAGCATTCCACTTGACAGACCTTGATCTTTCAGAGAATAAACTTAGTGGGAAAATACCAGATGATTTGGGAAGGCTCAATAACTTAAAATACTTGAATTTGTATAGCAATCAGTTATCTGGGAAGGTACCAGAAAGCATTGCTCGTCTGCGGGCTCTGACCGATTTTGTTGTTTTTATCAACAATTTATCAGGTACTCTTCCTTTAGACTTCGGTCTGTTCTCAAAGCTTGAAACATTTCAGGTTGCATCTAATAGTTTCACAGGAAGGTTGCCAGAGAACTTGTGCTACCATGGAAGTTTAGTTGGTTTAACTGCTTATGACAATAACCTGAGTGGGGAGTTGCCAGAATCTTTAGGAAGTTGCAGTAGCCTGCAAATTCTGAGGGTTGAAAACAATAATCTTTCTGGCAACATTCCCAGTGGTCTATGGACATCTATGAACTTGACAAAAATTATGATAAATGAAAACAAGTTCACTGGTCAACTTCCTGAAAGATTTCATTGTAATCTTTCAGTCCTGTCCATAAGTTACAATCAGTTTTCTGGTAGAATTCCGCTCGGAGTGTCTTCCTTGAAGAATGTTGTGATCTTCAATGCCAGTAACAACCTCTTCAATGGTAGTATTCCACTGGAGCTAACATCTCTTCCCCGTCTAACAACTCTTCTGCTTGATCATAACCAGCTCACAGGGCCACTTCCATCAGATATAATATCATGGAAGTCCCTAATAACTCTAGATTTGTGCCACAATCAACTCTCTGGAGTAATCCCAGACGCAATTGCTCAGTTACCTGGCCTTAATATTTTGGATTTGTCAGAAAACAAAATCTCTGGTCAAATTCCACTTCAACTAGCCCTTAAGAGACTCACAAATCTCAATCTGTCGTCCAATCTTTTGACAGGGAGGATTCCAAGTGAACTAGAAAACCTTGCTTATGCCACAAGCTTTTTAAACAATTCCGGTCTCTGTGCTGATAGTAAAGTACTAAACCTTACCTTGTGTAATTCTAGGCCTCAAAGGGCAAGAATTGAAAGAAGATCTGCATCTCATGCTATAATCATAAGCCTGGTGGTAGCAGCCTCCTTACTGGCTTTGTTGTCATCATTCTTGATGATCAGAGTTTACAGAAAAAGAAAGCAAGAATTGAAAAGGTCATGGAAGCTCACTTCCTTTCAGAGGCTGAGTTTCACAAAAAAAAATATTGTGTCTTCAATGTCAGAACACAATATTATTGGCAGTGGTGGGTATGGTGCAGTATATCGTGTCGCTGTTGATGATTTAAATTATGTTGCAGTGAAAAAGATATGGAGTAGCAGAAAGTTAGAGGAGAAGCTTGTAAGTTCATTTCTTGCAGAGGTTGAAATACTGAGCAATATTCGTCATAACAACATTGTAAAGTTGCTATGCTGCATCTCCAAAGAGGATTCTCTGCTCCTTGTCTATGAGTATCTGGAAAACCATAGCCTTGATAGGTGGCTACAAAAGAAAAGTAAGCCAGCAGCTGTGTCAGGTTCAGTCCTTGATTGGCCAAAGAGATTGCATATAGCCATTGGAGCAGCACAAGGTTTGTGCTACATGCATCATGACTGCTTACCACCGGTTGTTCATCGCGATGTGAAAACAAGTAACATTCTGTTGGATTCTCAATTCAATGCAAAAGTTGCTGATTTTGGTCTGGCCAAGATGTTGATGAAGCCAGAAGAACTTGCTACCATGTCAGCGGTGGCAGGCACATTCGGCTATATTGCTCCAGAATATGCTCAAACGACTAGAGTCAATGAGAAGATAGATGTCTATAGCTTTGGAGTTGTCCTATTGGAACTGACAACTGGAAAAGAAGCCAATCGTGGAGATGAATATTCATGTCTCGCGGAATGGGCGTGGCGCCACATTCAGATAGGGACTGATGTAGAAGACATTTTGGATGAAGAAATTAAGGAAGCTTGTTACATGGAAGAAATCTGCAACATCTTCAGACTTGGGGTTATGTGCACTGCTACCCTGCCAGCCAGTAGACCTTCCATGAAGGAAGTTCTTAAAATATTGCTCACCTGCAGCAATCTACTTACCAATGGAGAGAAGAATGCTGGTTTCTATGATTCTATTCCACTTCTTAAGAATTCAAAATGGGAAAACCAGGTGGAATATTATACTGATGATGATTGA 3042 0.4119 MKKTTSSCDKMPILSLLSFFLFLTYANSQSQYSLLYDQEHAVLLRIKQHLQNPPFLNHWTPSNSSHCTWPEISCTNGSVTSLTMINTNITQTLPPFLCDLTNLTHVDFQWNFIPGEFPKYLYNCSKLEYLDLSQNYFVGKIPDDIDHLASLSFLSLGGNNFSGDIPASIGRLKELRSLQLYQCLLNGTFPAEIGNLSNLESLYVFSNHMLPPTKLPSSLTQLNKLKVFHMYESSLVGEIPEAIGHMVALEELDLSKNDLSGQIPNDLFMLKNLSILYLYRNSLSGEIPGVVEAFHLTDLDLSENKLSGKIPDDLGRLNNLKYLNLYSNQLSGKVPESIARLRALTDFVVFINNLSGTLPLDFGLFSKLETFQVASNSFTGRLPENLCYHGSLVGLTAYDNNLSGELPESLGSCSSLQILRVENNNLSGNIPSGLWTSMNLTKIMINENKFTGQLPERFHCNLSVLSISYNQFSGRIPLGVSSLKNVVIFNASNNLFNGSIPLELTSLPRLTTLLLDHNQLTGPLPSDIISWKSLITLDLCHNQLSGVIPDAIAQLPGLNILDLSENKISGQIPLQLALKRLTNLNLSSNLLTGRIPSELENLAYATSFLNNSGLCADSKVLNLTLCNSRPQRARIERRSASHAIIISLVVAASLLALLSSFLMIRVYRKRKQELKRSWKLTSFQRLSFTKKNIVSSMSEHNIIGSGGYGAVYRVAVDDLNYVAVKKIWSSRKLEEKLVSSFLAEVEILSNIRHNNIVKLLCCISKEDSLLLVYEYLENHSLDRWLQKKSKPAAVSGSVLDWPKRLHIAIGAAQGLCYMHHDCLPPVVHRDVKTSNILLDSQFNAKVADFGLAKMLMKPEELATMSAVAGTFGYIAPEYAQTTRVNEKIDVYSFGVVLLELTTGKEANRGDEYSCLAEWAWRHIQIGTDVEDILDEEIKEACYMEEICNIFRLGVMCTATLPASRPSMKEVLKILLTCSNLLTNGEKNAGFYDSIPLLKNSKWENQVEYYTDDD* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0065 1013 PRINTS Leucine-rich repeat signature 296 309 - -
Gso1g0065 1013 PRINTS Leucine-rich repeat signature 555 568 - -
Gso1g0065 1013 Pfam Leucine rich repeat 508 568 IPR001611 GO:0005515
Gso1g0065 1013 Pfam Leucine rich repeat 111 161 IPR001611 GO:0005515
Gso1g0065 1013 Pfam Leucine rich repeat 295 353 IPR001611 GO:0005515
Gso1g0065 1013 Pfam Leucine rich repeat N-terminal domain 38 74 IPR013210 -
Gso1g0065 1013 Gene3D Transferase(Phosphotransferase) domain 1 776 989 - -
Gso1g0065 1013 Gene3D Ribonuclease Inhibitor 347 626 IPR032675 -
Gso1g0065 1013 ProSiteProfiles Protein kinase domain profile. 697 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0065 1013 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 13 1005 - -
Gso1g0065 1013 ProSitePatterns Protein kinases ATP-binding region signature. 703 726 IPR017441 GO:0005524
Gso1g0065 1013 Pfam Protein kinase domain 699 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0065 1013 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 13 1005 - -
Gso1g0065 1013 SUPERFAMILY L domain-like 46 379 - -
Gso1g0065 1013 SUPERFAMILY Protein kinase-like (PK-like) 687 975 IPR011009 -
Gso1g0065 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 826 838 IPR008271 GO:0004672|GO:0006468
Gso1g0065 1013 Gene3D Ribonuclease Inhibitor 35 212 IPR032675 -
Gso1g0065 1013 Gene3D Ribonuclease Inhibitor 213 346 IPR032675 -
Gso1g0065 1013 Gene3D Phosphorylase Kinase; domain 1 679 775 - -
Gso1g0065 1013 SMART LRR_typ_2 246 270 IPR003591 -
Gso1g0065 1013 SMART LRR_typ_2 100 124 IPR003591 -
Gso1g0065 1013 SMART LRR_typ_2 578 602 IPR003591 -
Gso1g0065 1013 SMART LRR_typ_2 317 341 IPR003591 -
Gso1g0065 1013 SMART LRR_typ_2 196 222 IPR003591 -
Gso1g0065 1013 SMART LRR_typ_2 413 437 IPR003591 -
Gso1g0065 1013 SMART LRR_typ_2 148 172 IPR003591 -
Gso1g0065 1013 SMART LRR_typ_2 507 531 IPR003591 -
Gso1g0065 1013 SUPERFAMILY RNI-like 294 604 - -
Gso1g0065 1013 SMART serkin_6 697 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0065 Gso-Chr1 775588 779183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0065 30 974 Receptor kinase-like Gene Family AT5G25930 52.626 0.0 968
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso1g0065 Pkinase 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0065 - - gmx:100785907 1940.62