Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0049 ATGTTTCTTGAAATTGTGAGAAATCGCAAACAAATACAGCCGATTCAACCACAATTATGGTCTCGTTGCAGGCACAAACACTTACAAATTCTTGACGTTGTGGTCAAAATCAAGAAATTTACATTCAAAGGAAGTCAACATCTGTACAGAAAAAGTTGTACAAAGCTAAAAATGGAGAATAGCTGCATTCTAGCTTTTCTCCTCCTCATTCTCCACTCAAGTACAACAAAAGCTGCCTTCAGTGTTGGTGGTGGAGTTGGTGTAGGTGTTGGTGTTGGTGTTGGTGTTGGCAATGGGAATGGTGGTGGTGATGGTGGCAGTGGTGGAGTGGTTTGGGTTGGTGGAGGGATTAACAGCCCAGAGCCACCTAGATCCTCAGTGCCAAATCTTGAAGGAGCTTACACAGCACTTCAGGCATGGAAATCTGCAATCACTGAGGACCCTCTTAAGATTTTATCAAGTTGGGTTGGTCCTAATGTGTGTGCTTACAAAGGAGTCTTCTGTGCAAACCCTCAAGATGAAATGGTTGCATCAGCATTCCCAGTTGTAGCAGGCATAGATCTCAACCATGCAAATCTGAAAGGAACCCTTGTGAAGGAGCTCTCTCTACTCAGTGATTTGTCTCTTCTCCACCTCAACAGTAACAGATTCACAGGCACTGTTCCTGATACATTCAGAGACCTGGTTTTTCTGGAAGAGTTAGACCTCAGCAACAACCAACTCTCAGGTCCTTTCCCTGCTGCTACTTTGTACATGCCAGGCCTCATCTACTTGGACCTCAGATTCAACTACTTTTCTGGGCCCCTCCCTCAGGAACTTTTCAGCAAGAACCTTGATGCATTATTCCTCAATAACAACCAGTTTGAAGGTGAAATCCCCCAAAACTTGGGCAGTTCCCCAGCCTCAGTGATAAACTTAGCCAACAACAAGTTGAGTGGTAGCATCCCAGCAAGTTTGGGCTTCATGGGTTCTAAAATAAAGGAGATTCTGTTCCTCAATAACCAGTTAACTGGCTGCATTCCTGAGGGAGTTGGGCTATTCACAGAGATGCAAGTTCTGGATGTGAGCTTCAACTCACTCATGGGTCATTTGCCAGACACACTGTCATGCCTGCAAGACATAGAAGTTCTCAATTTGGCTCATAACAAGCTCTCTGGGGAATTATCAGATGTAGTGTGCTCTTTGAGAAGCCTTGCAAATCTAACTGTTGCTTACAATTTCTTTTCTGGGTTCAGCCAGCAATGCTCAAGGCTTTTCTTTAGGAATGTTGGTTTTGATTTCTCACTAAACTGCATTCCTGATAGGGACATGCAGAGACCTCCACCTGAGTGCTCTGGCATCCCAGGTGGAAGTCTTAGTTGTCTCAGAATCCCCACACCAAGGCCTCTTGTTTGTGGTTCAATGGCTGTAAGTAAGTCTAAGCACATTGATCCCACTTCACCATCTCCTCCTTGA 1455 0.4474 MFLEIVRNRKQIQPIQPQLWSRCRHKHLQILDVVVKIKKFTFKGSQHLYRKSCTKLKMENSCILAFLLLILHSSTTKAAFSVGGGVGVGVGVGVGVGNGNGGGDGGSGGVVWVGGGINSPEPPRSSVPNLEGAYTALQAWKSAITEDPLKILSSWVGPNVCAYKGVFCANPQDEMVASAFPVVAGIDLNHANLKGTLVKELSLLSDLSLLHLNSNRFTGTVPDTFRDLVFLEELDLSNNQLSGPFPAATLYMPGLIYLDLRFNYFSGPLPQELFSKNLDALFLNNNQFEGEIPQNLGSSPASVINLANNKLSGSIPASLGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMQVLDVSFNSLMGHLPDTLSCLQDIEVLNLAHNKLSGELSDVVCSLRSLANLTVAYNFFSGFSQQCSRLFFRNVGFDFSLNCIPDRDMQRPPPECSGIPGGSLSCLRIPTPRPLVCGSMAVSKSKHIDPTSPSPP* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0049 484 Pfam Leucine rich repeat N-terminal domain 134 168 IPR013210 -
Gso1g0049 484 SUPERFAMILY L domain-like 133 417 - -
Gso1g0049 484 PRINTS Leucine-rich repeat signature 231 244 - -
Gso1g0049 484 PRINTS Leucine-rich repeat signature 371 384 - -
Gso1g0049 484 Pfam Leucine rich repeat 207 264 IPR001611 GO:0005515
Gso1g0049 484 PANTHER LRR/EXTENSIN 57 484 - -
Gso1g0049 484 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 57 484 - -
Gso1g0049 484 Gene3D Ribonuclease Inhibitor 300 424 IPR032675 -
Gso1g0049 484 Gene3D Ribonuclease Inhibitor 133 299 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0049 Gso-Chr1 591715 593872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0049 128 456 Leucine-rich Repeat extension Gene Families AT3G24480 49.552 1.32e-103 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0049 - - gsj:114407518 903.664