Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0048 ATGAGTAAGATCAGCAACTTGAGTTCTGTAAGCAGTTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAGTTGTGTGGATCCAAGCAGTGCCCCGGTTGCGGACACAAGTTTGAAGGGAAGCCGGACTGGCTAGGCTTGCCCGCAGGAGTGAAGTTTGATCCCACAGACCAAGAACTAATAGAACATCTTGAAGCCAAAGTGGAGGCAAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATTCCCACTATTGAAGGAGAAGATGGAATTTGTTATACCCATCCGGAGAAACTTCCAGGAGTAACAAGAGATGGGTTGAGCAGGCACTTCTTCCATAGACCTTCAAAGGCTTACACAACTGGGACAAGAAAGAGGAGAAAGATTCAAAACGAATGCGACTTGCAAGGTGGAGAAACCCGGTGGCACAAGACTGGTAAGACCAGGCCAGTGATGGTGAATGGAAAACAAAAGGGTTGCAAGAAAATTCTTGTCCTCTACACCAATTTCGGAAAGAACAGAAAACCTGAGAAAACCAACTGGGTGATGCACCAATACCATTTGGGGCAGCATGAGGAAGAGAAAGAAGGAGAGCTTGTGGTGTCAAAGATATTCTATCAGACACAGCCAAGGCAGTGCAATTGGTCAGATAGAAGTGCAACAACTGGTGAAGGAAGTGGAGAACCTAACAACAGTGGTAGAAGGGACAGTGGAAGTGGAAGTTGTTCTTCTAAGGAAATTGTTACTCACAGAGATGAGATGTCTGCTGTTGTTGGTGTCCCTCCAATGACAAGTTTCACTCATCATCATCCCTTGGATATTCAACAGCTAAAACCTGATCACTTCAGCTTCATCCCTTTCAGGAAAAGCTTTGATGAGAGAATGCAGGTTGGAATAGGAGAGGCTTCAACAGCAAGAGAAGTAATGCAAGCATCAGGTTCATGTGAAGAAGTGCATGAACGGCACCTAGCACAAGTAACTCCTCATCATCATCAACTACAACAACATGCTCATCATCATCAAATTTCAAACTCAGCTTTTCATATTAGTAGGCCGTCACATCCCATCTCTACCATTATCTCTCCTCCTCCCCTCCACCACACTTCCATCATTCTCGATGACAACTCTTACCATGTCTCTAGAATAATGCTCCAAAATGAAAATTTTCAGCAACAGCAGCAACAACATCATAAGCTTGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATAATGGGTTGCACTTCAACTGAAATCAAAGAGGAGTCATCCATCACAAATGCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTATTGGCCAGACCCTGACAACCAGGATCATCATGGGTAG 1356 0.444 MSKISNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEPNNSGRRDSGSGSCSSKEIVTHRDEMSAVVGVPPMTSFTHHHPLDIQQLKPDHFSFIPFRKSFDERMQVGIGEASTAREVMQASGSCEEVHERHLAQVTPHHHQLQQHAHHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDNSYHVSRIMLQNENFQQQQQQHHKLGGRSASGLEELIMGCTSTEIKEESSITNAQEAEWLKYSSYWPDPDNQDHHG* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0048 451 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Gso1g0048 451 MobiDBLite consensus disorder prediction 215 246 - -
Gso1g0048 451 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 4 444 IPR044799 GO:0003700
Gso1g0048 451 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Gso1g0048 451 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Gso1g0048 451 MobiDBLite consensus disorder prediction 215 249 - -
Gso1g0048 451 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 4 444 - -
Gso1g0048 451 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0048 Gso-Chr1 578020 584203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0048 11 448 NAC Transcription Factor Family AT5G56620 53.813 1.85e-141 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso1g0048 NAM 3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0048 - - gmx:100795246 867.07