Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0042 ATGATGCTCGGAGAACACCATCGCGGGAATCCGACGGTCCTCGTGCCACCGTGGCCAGCCCACGACGATCCAACGGCTGAGATGTACTCCGCGTTCTTAACAAACGACGTCAATGCTGGTGAGTACTCTCCGTACCATCTTCAAGAAGCACTAACGGCGCTGCAGCGTTTTCTGCCGTCAAACGAAACGGACGCAGACTCGGACTCCTCGGAGGCGGCTCAGCCCGACGCGGCGGTGGACGCGTACACGTGCGACCATTTCCGCATGTACGAGTTCAAGGTCCGTCGATGCGCACGTGGCAGGTCACACGACTGGACGGAGTGTCCGTACGCGCATCCCGGCGAGAAGGCCCGCCGCCGTGACCCGCGGAGGTTCCACTACTCTGGCGTGGCGTGCCCGGAGTTCCGCAAGGGAAACTGCAGGAAAGGCGACGCGTGCGAGTTCGCGCACGGCGTTTTCGAGTGCTGGCTCCATCCGGCGCGCTACCGGACTCAGCCATGCAAGGACGGCACGAGCTGCCGGCGGCGCGTGTGCTTCTTCGCGCACACGCCGGAGCAGCTGCGCGTCCTGCCGATGCAGAGTCCGCGTAGCGTGGCAAACTCATCGGAGTCCTACGACGGGTCTCCGATGAGGCAGGTTTCGTTGTCGTCGTCGGCGGCGGCGGCGGCGTTCATGTCTTCTCCGGCGGCTTCTCTCTCTCCGCCAGAGTCGCCGCCATCGGTGAACGAGATGGTGGCTTCTCTGCGTAATTTGCAGCTTGGGAAAATGAAATCGATGCCTCACAATAGGAACGTGTCGGTCGGGTCGCCGAGGGGATCGGTACTCCGACCGGGTTTTTTAAGCCTTCCAACAACGCCAACTCAGCAACCGGTTCGGTCTGGGGTGAAGTGTTTTGATGTTTGGGATGAGAGTTTTGAGGAGGAACCAGTTATGGAGAGGGTGGAGTCAGGGAGGGGAATAAGGGCTAAGATGTTTGAGAAGCTCAGCAAGGAGAATTCACTCGACGCCTCGGCTTCGCCTCCGGATCTTGGGTGGGTCTCGGAGCTTGTTAAGTGA 1056 0.607 MMLGEHHRGNPTVLVPPWPAHDDPTAEMYSAFLTNDVNAGEYSPYHLQEALTALQRFLPSNETDADSDSSEAAQPDAAVDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRRFHYSGVACPEFRKGNCRKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPMQSPRSVANSSESYDGSPMRQVSLSSSAAAAAFMSSPAASLSPPESPPSVNEMVASLRNLQLGKMKSMPHNRNVSVGSPRGSVLRPGFLSLPTTPTQQPVRSGVKCFDVWDESFEEEPVMERVESGRGIRAKMFEKLSKENSLDASASPPDLGWVSELVK* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0042 351 ProSiteProfiles Zinc finger C3H1-type profile. 127 153 IPR000571 GO:0046872
Gso1g0042 351 PANTHER UNKEMPT FAMILY MEMBER 7 351 IPR045234 -
Gso1g0042 351 SMART c3hfinal6 126 152 IPR000571 GO:0046872
Gso1g0042 351 SMART c3hfinal6 161 184 IPR000571 GO:0046872
Gso1g0042 351 Gene3D - 122 196 - -
Gso1g0042 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 151 IPR000571 GO:0046872
Gso1g0042 351 MobiDBLite consensus disorder prediction 330 351 - -
Gso1g0042 351 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0042 Gso-Chr1 501295 503196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0042 75 265 C2H2 Transcription Factor Family AT5G12850 50.485 1.22e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso1g0042 zf-CCCH 7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0042 - - gmx:100809761 690.263