Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0041 ATGGGAAGGGCTCCATGTTGTGACAAATCCAATGTGAAAAGAGGGCCTTGGTCTCCTGATGAAGATGCCACCCTCAAAAACTACCTTGAGAAACATGGCACAGGTGGTAACTGGATAGCTCTCCCCAAAAAAGCAGGCCTTAAGCGTTGTGGGAAGAGCTGTCGTCTAAGATGGCTAAACTATCTCAGGCCTCATATTAAGCTTGGAGGTTTCACTGAAGAGGAAGACAAAATTATCTGCACCCTTTATGACACCATCGGAAGCAGGTGGTCCTTTATAGCAGCTCAACTTCCCGGGAGAACAGACAATGATGTGAAAAATCACTGGAACACCAAGCTAAAGAAAAAGTTCTTGGCAGGAAACACAAGTAGTACTGCTGCCACGACAAGCAACAACAATGTCACTTTCAGCAATACTAGTTATTCTGATCAAGTTAAGACCCTTGTCTTGGATCATCAAAAACTGAACTCAGCTGATAATTGGTTTGACTACTCCTACAATGTTTTGGAATTGGAACAAACACCAATTCCAGTTCCTTTTCCAATGTCTCAGGAATTAGAGGCTTTTAATTATACTGCTGGGAGTATAAGTTGTAGTGCACCACCACCCTCTAAGGAAGTTTCAATGCTTTCCAATGCAGACAATCATACGCTATGGTTTGGTTATGACCATGCAAGTGAAGATGATCCAAATTTGCTTGAGTTTGTGCTTGATGATGATCTGCTGAATCATGGATTTGTTTCTCAAGACAAAAGCTGCAGCCAAGTTGGTCCACCATCTGGCTAA 786 0.4262 MGRAPCCDKSNVKRGPWSPDEDATLKNYLEKHGTGGNWIALPKKAGLKRCGKSCRLRWLNYLRPHIKLGGFTEEEDKIICTLYDTIGSRWSFIAAQLPGRTDNDVKNHWNTKLKKKFLAGNTSSTAATTSNNNVTFSNTSYSDQVKTLVLDHQKLNSADNWFDYSYNVLELEQTPIPVPFPMSQELEAFNYTAGSISCSAPPPSKEVSMLSNADNHTLWFGYDHASEDDPNLLEFVLDDDLLNHGFVSQDKSCSQVGPPSG* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0041 261 CDD SANT 71 113 IPR001005 -
Gso1g0041 261 PANTHER OS09G0431300 PROTEIN 1 147 - -
Gso1g0041 261 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso1g0041 261 CDD SANT 16 62 IPR001005 -
Gso1g0041 261 Gene3D - 70 141 - -
Gso1g0041 261 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gso1g0041 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 117 IPR017930 -
Gso1g0041 261 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Gso1g0041 261 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gso1g0041 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Gso1g0041 261 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gso1g0041 261 SMART sant 13 64 IPR001005 -
Gso1g0041 261 SMART sant 67 115 IPR001005 -
Gso1g0041 261 Gene3D - 6 68 - -
Gso1g0041 261 PANTHER OS09G0431300 PROTEIN 1 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0041 Gso-Chr1 493976 495943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0041 1 119 MYB Transcription Factor Family AT5G57620 79.832 4.03e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso1g0041 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0041 K09422 - gmx:778160 538.495