Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0039 ATGCCAAGTTCGATCGGGTGCATACTGTTGCTGACACTTTGTGACCTTGTCCTCGTAGCTTTAGTTCATGCACAGCAACAAATAGGCTTCATAAGCATTGATTGCGGGGGTACTCCAACCAATAATGAGTACACAGATGAAATAACTAACATAAGGTACACCACTGATGGAGCCTATATACAAACTGGGGTTAATAAGAACATTTCCTCCGAGTATGCATACCCTAAGAATCCTAATCTGCCACTTCTACTCTCAGATCTCAGAAGCTTTCCTCTGGGAGAAAGGAACTGTTATAGGTTAGTAGCTGGAAAAAGAGGCGAGTTACATTTGATAAGGGCTTCCTTCTTGTATGGAAACTATGATGGAGAAAACAAGCCACCAGAGTTTGATCTCTATGTTGATGTCAATTTTTGGTCAACAGTCAAATTTAGAAATGCCTCAGAAGAAGTTACTATGGAAATAATCAGTGTGGCACAATCAGGTGCCACACATGTTTGCCTTGTGAACAAGGGAGCAGGAACTCCTTTTATCTCAGGCTTGGAACTTAGACCACTTAATAGTTCTATTTATGACACTGAGTTTGGAGAATCTGCTTCACTGTCACTTTTCAAACGATGGGACATTGGGTCTACCAATGGAAGTGGTAGATATGAGGATGATATTTATGATAGAATCTGGTCCCCCTTCAATTCCTCATCCTGGGAATCTGTCAACACTTCCACCCCAATAAATGTCAATGATGATGGCTATAGACCCCCATTTAAAGTCATTAGAACTGCTGCTAGACCAAGGAATGGCAGTGATACTTTGGAATTTTCTTGGACCCCTGATGATCCGAGTTGGAAATTTTATGTCTACTTGTACTTTGCTGAAGTGGAACAGCTTGAGAAAACCCAACTGAGGAAATTCAATATATCTTGGAATGGATCTCCATTGTTTGATGATTCCCTAATACCGCGCCACTTGTTTGCAACCACTCTTTCTAATTCAAAATCCTTGGTAGCAAATGAACATAAGATTTCTATCCACAAAACAAAAGATTCAACTCTTCCACCCATTCTTAATGCGGTTGAGATTTATGTAGCAAGACAGCTAGATGCCCTTGCAACATTTGAAGAAGATGTTGATGCTATTCTGTCCATAAAGGAAAACTATAGAATTCAAAGAAATTGGGTGGGTGATCCATGTGAGCCAAAGAACTACTCTTGGGAAGGTTTAAAATGCAACTATAGCACCTCACTTCCTCCCCGAATTATATCTCTGAATATGAGCTCAAGCAGTTTGAGTGGAATAATAACTTCTGCCATTTCCAATCTCTCCTCGTTGGAATCTTTGGACTTACATAACAATAGCTTAACTGGAGCAATGCCTCAGTTTTTGGAAGAATTGATATCCCTTAAATATTTGGATTTAAAGGGCAATCAATTTTCAGGATCTGTTCCTACCATTCTTTTAGAAAGATCAAGGGCTGGATTACTCACATTGAGGGTGGATGATCAAAATCTCGGGGACACAGGAGGGAACAATAAAACCAAGAAAATTGTTATTCCCGTAGTGGTATCAGTATCAGTTTTAGTTATATTGATTGCTTTCACTCTCTTTTGGAAACTTAGAAGAAATGAACGATCAGACGAGGAGATTAGTATGCTCAACAAAGGAGGAAAAACCGTAACAACGAAGAACTGGCAATACACATATTCAGAGGTGTTGGACATCACCAACAACTTTGAAATGGCAATTGGTAAGGGAGGATTTGGAACTGTGTACTGTGGGGAGATGAAAGATGGCAAACAAGTTGCAGTCAAGATGCTTTCTCCATCATCATCTCAAGGGCCAAAGGAATTTCGGACTGAGGCTGAGCTTTTGATGACAGTTCATCACAAAAATTTGGTATCCTTCGTTGGCTACTGTGATGATGATAACAAGATGGCACTCATTTACGAGTACATGGCCAATGGCAGCCTGAAAGATTTTCTCTTGCTCTCAGATGGAAATTCACATTGCTTGAGTTGGGAAAGGAGAATACAGATAGCAATCGATGCTGCAGAGGGGTTGGATTACCTACACCATGGATGCAAGCCACCAATAATACACAGGGATGTAAAGTCAGCCAACATTCTTTTAAGTCAAGACTTTGAAGCTAAGATAGCAGATTTTGGCCTCTCCAGGGAGTTTAGGAAAGATAACCAAGATCAACAATTTCAAGTCATTCACAAAGATGCTACATATGAAAAATCTGCAGTAATGGGCACAACAGGGTACCTTGATCCAGAGTACTACAAATTAGGGAGACTGAATGAGAAAAGTGACATCTATAGTTTTGGAATTGTTCTACTGGAATTACTCACAGGTCGCCCTGCAATATTAAAAGGCAACCGAGTAATGCACATACTTGAGTGGATAAGACCTGAGCTTGAAAGAGGAGATTTGAGTAAAATTATAGATCCAAGGCTCCAAGGAAAATTTGATGCTAGTTCTGGGTGGAAAGCTTTAGGAATAGCAATGTCATGCTCTACATCAACCTCCATTCAGAGACCTACAATGAGTATTGTGATAGCAGAGCTGAAACATTGCTTGAAATTGGAATCCCCTAGTGATACTAAAACATTTGTGGCCCCTCCAAGACAAGTCTGCGACGAAGTTTATAGTTCATCTGAAGCATTTTCCTATGATAGTGAATCTATCACCTCTCCTTTTCCAAGATAG 2706 0.4013 MPSSIGCILLLTLCDLVLVALVHAQQQIGFISIDCGGTPTNNEYTDEITNIRYTTDGAYIQTGVNKNISSEYAYPKNPNLPLLLSDLRSFPLGERNCYRLVAGKRGELHLIRASFLYGNYDGENKPPEFDLYVDVNFWSTVKFRNASEEVTMEIISVAQSGATHVCLVNKGAGTPFISGLELRPLNSSIYDTEFGESASLSLFKRWDIGSTNGSGRYEDDIYDRIWSPFNSSSWESVNTSTPINVNDDGYRPPFKVIRTAARPRNGSDTLEFSWTPDDPSWKFYVYLYFAEVEQLEKTQLRKFNISWNGSPLFDDSLIPRHLFATTLSNSKSLVANEHKISIHKTKDSTLPPILNAVEIYVARQLDALATFEEDVDAILSIKENYRIQRNWVGDPCEPKNYSWEGLKCNYSTSLPPRIISLNMSSSSLSGIITSAISNLSSLESLDLHNNSLTGAMPQFLEELISLKYLDLKGNQFSGSVPTILLERSRAGLLTLRVDDQNLGDTGGNNKTKKIVIPVVVSVSVLVILIAFTLFWKLRRNERSDEEISMLNKGGKTVTTKNWQYTYSEVLDITNNFEMAIGKGGFGTVYCGEMKDGKQVAVKMLSPSSSQGPKEFRTEAELLMTVHHKNLVSFVGYCDDDNKMALIYEYMANGSLKDFLLLSDGNSHCLSWERRIQIAIDAAEGLDYLHHGCKPPIIHRDVKSANILLSQDFEAKIADFGLSREFRKDNQDQQFQVIHKDATYEKSAVMGTTGYLDPEYYKLGRLNEKSDIYSFGIVLLELLTGRPAILKGNRVMHILEWIRPELERGDLSKIIDPRLQGKFDASSGWKALGIAMSCSTSTSIQRPTMSIVIAELKHCLKLESPSDTKTFVAPPRQVCDEVYSSSEAFSYDSESITSPFPR* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0039 901 PANTHER BNAC07G41790D PROTEIN 10 868 - -
Gso1g0039 901 Pfam Malectin-like domain 33 360 IPR024788 -
Gso1g0039 901 CDD STKc_IRAK 580 856 - -
Gso1g0039 901 Pfam Leucine rich repeat 420 476 IPR001611 GO:0005515
Gso1g0039 901 PANTHER OS07G0107800 PROTEIN-RELATED 10 868 - -
Gso1g0039 901 Gene3D Phosphorylase Kinase; domain 1 580 650 - -
Gso1g0039 901 SUPERFAMILY Protein kinase-like (PK-like) 559 855 IPR011009 -
Gso1g0039 901 SUPERFAMILY L domain-like 390 485 - -
Gso1g0039 901 ProSitePatterns Serine/Threonine protein kinases active-site signature. 696 708 IPR008271 GO:0004672|GO:0006468
Gso1g0039 901 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Gso1g0039 901 Pfam Protein tyrosine and serine/threonine kinase 577 852 IPR001245 GO:0004672|GO:0006468
Gso1g0039 901 Gene3D Transferase(Phosphotransferase) domain 1 651 872 - -
Gso1g0039 901 Gene3D Ribonuclease Inhibitor 366 489 IPR032675 -
Gso1g0039 901 ProSiteProfiles Protein kinase domain profile. 574 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0039 901 SMART serkin_6 574 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0039 Gso-Chr1 483544 489413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0039 8 887 Receptor kinase-like Gene Family AT4G29180 50.112 0.0 863
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Gso1g0039 Malectin_like 2e-108 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0039 - - gmx:100793137 1771.52