Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0024 ATGGGGAGAAAGTGCTCACATTGTGGAAACATAGGTCATAATTCCAGGACCTGTGCATCTTTCAGAGCAACTAATTTTGTAGGAGTTCGTCTTTTTGGGGTTCAACTAGCTGACATATCATCAACCTCTTCTAATTCTCTTTCCATGAAGAAAAGCTTTAGCATGGATTCCTTTCCCTCTTCGTCCTCTCCATCTTCCTCCTTTTCTTCCTCAAGAACCTCTATTGGCTATCTATCAGATTCAGATGGCCTCATTGTTGGAGCACAAGAGATTAGGAAGAAAGGAGTACCATGGACAGAAGAAGAGCACCGAACGTTCCTTGCTGGACTTGAGAAGCTGGGAAAAGGTGATTGGAGGGGTATCTCTAGAAACTATGTGACTTCAAGAACCCCAACCCAAGTCGCTAGCCATGCTCAGAAGTACTTTATTCGCCTTGCAACCATGAATAAGAAAAAGAGACGTTCAAGTCTTTTTGACATGGTTGGTAACGGCATCACAAATCCAATTAGCAGCTCTAACTGCAAGTCTTCCAAATGTGAAATTGAGGATGATGTGACCTTGTCACTTGTTCGATTACAAGATACTAAATTAGATGAGCAGAAAGATAGTGATAAATATTGTGAAGCTGGACCAGCAGGTGCTGAACATGAAGCTGTGCCTTTGTGGCTTCATCCTCAGATGAAATCTTCAAATAATAATGTTGCAGCAGTAGTTCCTGATCTGGAGCTCACTCTTGCAGTCTCCAAGGGCAAGGCTAAGACCCTGCTAGGCCTGGAACAAACACAAACAAAATCATCCCCAGATTCCTTCCTTCTTGGACCAATTAGCGTGACTTGA 837 0.4301 MGRKCSHCGNIGHNSRTCASFRATNFVGVRLFGVQLADISSTSSNSLSMKKSFSMDSFPSSSSPSSSFSSSRTSIGYLSDSDGLIVGAQEIRKKGVPWTEEEHRTFLAGLEKLGKGDWRGISRNYVTSRTPTQVASHAQKYFIRLATMNKKKRRSSLFDMVGNGITNPISSSNCKSSKCEIEDDVTLSLVRLQDTKLDEQKDSDKYCEAGPAGAEHEAVPLWLHPQMKSSNNNVAAVVPDLELTLAVSKGKAKTLLGLEQTQTKSSPDSFLLGPISVT* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0024 278 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Gso1g0024 278 SUPERFAMILY Homeodomain-like 91 146 IPR009057 -
Gso1g0024 278 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE ISOFORM X1 1 249 - -
Gso1g0024 278 Gene3D - 96 148 - -
Gso1g0024 278 ProSiteProfiles Myb-like domain profile. 90 142 IPR001005 -
Gso1g0024 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 146 IPR017930 -
Gso1g0024 278 ProSiteProfiles SANT domain profile. 98 146 IPR017884 -
Gso1g0024 278 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 93 144 IPR006447 GO:0003677
Gso1g0024 278 CDD SANT 97 142 IPR001005 -
Gso1g0024 278 SMART sant 94 144 IPR001005 -
Gso1g0024 278 PANTHER TRANSCRIPTION FACTOR KUA1 1 249 - -
Gso1g0024 278 Pfam Myb-like DNA-binding domain 97 142 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0024 Gso-Chr1 399879 401772 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso1g0024 Myb_DNA-binding 2.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0024 - - gmx:778053 495.352