Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0017 ATGGGAGTACTTCTATTTGTACTTGAATTAAATACAATGATGAAGAGTACACTCTCGTACTTTTCACGCAGCCTTCGATTCTTGGCTGGTTTGATAGCCTTCCATTTCCACTCCTTTTTTATTCAACTTTGTTATTTGATGATCCTTTCTCTGGTTGGTTACTTGGGTCTTAAGGTTTCAAAGCCAAGGAACCCTGTTAGGCTCAATGACTTGGACCTCTTTTACACCTCCGTTTCTGCTTCCACAGCTTCTAGCATGGTAGCCGTTGAAATGGAGGTTTTCTCCAATTCTCAACTCATTCTCTTCACCCTTCTCATGTTTCTTGGCGGGGAAGTTTTCACTTCCATGCTCGACCTTCTATTTGCTGGTTATAACTTACAAAACAAAGTTAGCATCAATCCTTTTCCACCCACAAATCATGCAAATCAAATAGAGCTTGGTTTAGTACTTTCTATTCCTCACTCGGATTCAGAAAACCACAATCCATGTGACAGTAATATTATTAACGTTGCATCATGCGATAGACTCAAGTATAACTGTCTTAGTTATTTGACATATGCAGTTTTAGGTTACCTTGTGATGGTTCAATTTGTTGGCTTTAGTTTTGTGTCTTTGTATATGACTTTGGTACCGAGTGCAAGACAAGTACTGAAAAACAAAGGCATCAAGATTGTAACATTTTCTTTGTTTACCGTAGTTTCCACTTTTGCTAGTTGTGGTTTTGTCCCCACCAATGAGAACATGATAGTTTTCAAGAAGAATTCGGGGCTTCTCCTCCTAATCCTCCCACACGTCTTTCTAGGTAACGCCCTGTATCCACCATGCTTGAGGCTTTTGATAATGGTTTTGAAAAAAGTTACAAAGAAAGAGGAATTCTCGTACTTGCTGAAGAATTCCGTAGATGTGGGCTATGAACATTTGCTCTCTGATCTTCGTTGTTGCTTCCTGGTTGCTACTGTCTTGGGATTCAATCTTATACAATTTGTGATGCTTTGCTCTTTGGAGTGGAAAACCAAAATCATGGAGGGTTTGAATGTGTATGAGAAAGTGGTGGCGTCATTATTTCAAGTAACAAACGCGAGACACGCTGGTGAATCTGTTTTTGATCTCTCCTCCATCTCTTCAGCCATATTAGTACTCTTCGTTGTCATGATGTACCTCCCACCATACACTACCTTCTTGCCAGTAAGAGAGCACGAAAAGGATGTCAACAAGAGAAACGAAAAAAGCGTAGTGGATTGTCTTGTATTGTCTCAGCTCTCTTACTTGGTCATTTTCATTATTCTGATTTGCATCACTGAGAGTAAAAGCTTAAAAGAGGATCCTCTCAACTTTAACGTGTTGTACATCACCTTAGAAGTCATCAGTGCTTATGGTAACGTAGGGTTCTCAACGGGATACAGCTGCGCTAGGCAATTGAAAACTGATGCAACGTGCAAAGATTCATGGGTTGGATTCTCGGGTAGGTGGAGTAGCAAAGGCAAGTTCATCCTTATCTTGGTCATGTTCTTTGGGAGGCTCAAGAAATTCAACATGAAAGGTGGCAAAGCATGGAAGCTCTCCTGGCCAGTATAA 1575 0.4051 MGVLLFVLELNTMMKSTLSYFSRSLRFLAGLIAFHFHSFFIQLCYLMILSLVGYLGLKVSKPRNPVRLNDLDLFYTSVSASTASSMVAVEMEVFSNSQLILFTLLMFLGGEVFTSMLDLLFAGYNLQNKVSINPFPPTNHANQIELGLVLSIPHSDSENHNPCDSNIINVASCDRLKYNCLSYLTYAVLGYLVMVQFVGFSFVSLYMTLVPSARQVLKNKGIKIVTFSLFTVVSTFASCGFVPTNENMIVFKKNSGLLLLILPHVFLGNALYPPCLRLLIMVLKKVTKKEEFSYLLKNSVDVGYEHLLSDLRCCFLVATVLGFNLIQFVMLCSLEWKTKIMEGLNVYEKVVASLFQVTNARHAGESVFDLSSISSAILVLFVVMMYLPPYTTFLPVREHEKDVNKRNEKSVVDCLVLSQLSYLVIFIILICITESKSLKEDPLNFNVLYITLEVISAYGNVGFSTGYSCARQLKTDATCKDSWVGFSGRWSSKGKFILILVMFFGRLKKFNMKGGKAWKLSWPV* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0017 524 PANTHER SODIUM TRANSPORTER HKT1 28 521 - -
Gso1g0017 524 Pfam Cation transport protein 176 387 IPR003445 GO:0006812|GO:0008324|GO:0055085
Gso1g0017 524 Pfam Cation transport protein 404 475 IPR003445 GO:0006812|GO:0008324|GO:0055085
Gso1g0017 524 PANTHER POTASSIUM TRANSPORT PROTEIN DDB_G0292412-RELATED 28 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0017 Gso-Chr1 358373 362919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0017 58 520 Inorganic Solute Cotransporters AT4G10310 50.210 1.53e-154 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0017 K24976 - gmx:100786243 1025.39