Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0012 ATGGCACTCCTCACTTCTTTTATAACTTCATTCACATTATTATTATTATTTGTGATTATGATAACTAGTGCTTCAGACACAGGATCTCTCCTCAAATTCAGAGACTCCCTTGAAAACAACAATGCATTGTTGTCCTCATGGAATGCATCCATCCCTCCATGTTCGGGTTCATCCCACTGGCCTCGCGTTCAGTGTTACAAGGGACACGTGTCGGGGTTGAAGCTCGAGAACATGAGGCTCAAAGGTGTCATTGACGTCCAATCCCTCCTGGAGTTACCATATCTCAGAACCATAAGCCTCATGAACAACGACTTCGACACTGAATGGCCTGATATCAACAAAATTGTGGGTTTGAAGACCCTTTTCCTTTCAAATAACAATTTCTCCGGGGAGATTCCGGCCCAGGCTTTTCAGGGCATGCAGTGGTTGAAGAAGATTCATCTCTCAAACAACCAGTTCACAGGTCCTATTCCAACTTCCCTCGCATCCATGCCTAGGCTTATGGAGTTGAGGTTGGAGGGAAACCAATTCACTGGCCCCATTCCCAATTTTCAACATGCATTCAAATCATTTAGCGTAGCCAATAATCAATTGGAGGGAGAAATACCAGCCAGCCTCCATAACATGCCACCTTCTTCTTTCTCTGGCAATGAAGGGGTATGTGGAGCACCGCTAAGTGCATGCTCCTCCCCAAAAAAGAAATCAACTGCGAGTATTGTTGCGGCAGCGGTTCTTGTTATTGTAGCACTGATAGTGATTGGAGCAGTAATATTGTTAGTCCTGCATCAAAGAAGAAAACAAGCTGGGCTAGAAGTGTCTGCGGAGAATCCATCATCAATAATGTTCCAATCCCAACAGAAAGAAGCCTCGTCGTCAGATGAAGGAAGTCGGGGGTCGCCTACTAGCTCGAGCCACAGAAGCAGAAGCTTGAGGCTATTGTTTGTGAGGGATGACAGAGAGAAGTTTGATTATAATGAACTGTTTAGAGCCTCAGCAAAGATGTTGGGCAGTGGTTGTTTCAGCTCTTCCTACAAGGTTGCTCTGTTGGACGGACCAGAGATGGTGGTGAAGAGATTCAAGCAGATGAACAATGTAGGGAGGGAGGAGTTTGATGAGCACATGCGACGGATTGGAAGGTTGAATCATCCTAATCTGCTTCCTCTGGTCGCCTACTACTACAGAAAGGTGGAGAAACTCTTGGTTACTGACTTTGTTCACAATGGAAGCTTGGCCGTTCGCCTTCACGGATACCAAGCTCTAGGACAAGAAAGCCTGGATTGGGCAAGCCGGTTGAAGATAGTGAAAGGCATAGCAAAAGGAATTGAACATCTGTACAAGGAGATGCCAAGCCTAATTGCGGCACATGGACATCTAAAGTCCTCCAACGTTCTTCTGAGTGAATCTTTGGAGCCCATCCTGACAGATTATGGGTTGGGGCCAGTGATAAACCAGGACCTTGCACCTGAAATCATGGTTATCTACAAGTCCCCAGAGTATGTGCAGCATGGGCGCATCACAAAGAAGACTGATGTGTGGAGTCTTGGGATACTCATTCTGGAGATTCTCACTGGCAAGTTCCCTGCTAACCTTCTACAAGGCAAAGGGAGTGAGTTGAGTTTGGCAAATTGGGTGCATTCGGTTGTCCCCCAAGAGTGGACTAGAGAGGTGTTTGATAAGGACATGGATGGAACCAATAACAGTGAGGGGGAGATGGTCAAGCTTTTGAAGATTGCATTGGCTTGTTGTGAAGGAGATGTGGACAAGAGATGGGACTTAAAAGAAGCAGTAGAAAGAATTCATGAGGTCAACGAGGAGGAGGTGAAGTCATCACTTTCTCCATGGATGGTTAATTGA 1854 0.4601 MALLTSFITSFTLLLLFVIMITSASDTGSLLKFRDSLENNNALLSSWNASIPPCSGSSHWPRVQCYKGHVSGLKLENMRLKGVIDVQSLLELPYLRTISLMNNDFDTEWPDINKIVGLKTLFLSNNNFSGEIPAQAFQGMQWLKKIHLSNNQFTGPIPTSLASMPRLMELRLEGNQFTGPIPNFQHAFKSFSVANNQLEGEIPASLHNMPPSSFSGNEGVCGAPLSACSSPKKKSTASIVAAAVLVIVALIVIGAVILLVLHQRRKQAGLEVSAENPSSIMFQSQQKEASSSDEGSRGSPTSSSHRSRSLRLLFVRDDREKFDYNELFRASAKMLGSGCFSSSYKVALLDGPEMVVKRFKQMNNVGREEFDEHMRRIGRLNHPNLLPLVAYYYRKVEKLLVTDFVHNGSLAVRLHGYQALGQESLDWASRLKIVKGIAKGIEHLYKEMPSLIAAHGHLKSSNVLLSESLEPILTDYGLGPVINQDLAPEIMVIYKSPEYVQHGRITKKTDVWSLGILILEILTGKFPANLLQGKGSELSLANWVHSVVPQEWTREVFDKDMDGTNNSEGEMVKLLKIALACCEGDVDKRWDLKEAVERIHEVNEEEVKSSLSPWMVN* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0012 617 Pfam Protein kinase domain 332 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0012 617 SUPERFAMILY Protein kinase-like (PK-like) 332 601 IPR011009 -
Gso1g0012 617 Gene3D Ribonuclease Inhibitor 189 229 IPR032675 -
Gso1g0012 617 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 607 - -
Gso1g0012 617 Gene3D Phosphorylase Kinase; domain 1 297 404 - -
Gso1g0012 617 MobiDBLite consensus disorder prediction 280 305 - -
Gso1g0012 617 Pfam Leucine rich repeat N-terminal domain 24 65 IPR013210 -
Gso1g0012 617 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Gso1g0012 617 Gene3D Ribonuclease Inhibitor 25 188 IPR032675 -
Gso1g0012 617 PANTHER LRR RECEPTOR-LIKE KINASE 10 607 - -
Gso1g0012 617 Gene3D Transferase(Phosphotransferase) domain 1 405 612 - -
Gso1g0012 617 SUPERFAMILY L domain-like 24 209 - -
Gso1g0012 617 ProSiteProfiles Protein kinase domain profile. 329 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0012 Gso-Chr1 317026 319989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0012 13 606 Receptor kinase-like Gene Family AT5G35390 50.968 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso1g0012 Pkinase 5.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0012 - - gmx:100785189 1139.79