Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0003 ATGGATAACGAGGTCGAGGTGCTAGAATTTGATATTGGGCTGGGAGGAGGCGAGGGAGAATATGACGATGACGACGGAGGAGGAATTGATGAGGAGGAATTGGGTGTAGCCACTGGAGGTGGGGAAATATATCTTCCTGAGGTGGACCTCTTAGATCTTGAACCTTGCGAGGGCATGGAATTCGAGTCTGAAGAGGCTGCCAAGGCCTTCTACAATTCCTATGCCCGTCGTGTTGGGTTTAGTACTCGCGTCAGCTCATCCCGTCGTTCCAGGCGCGATGGAGCTATTATACAGAGGCAATTTGTTTGCGCAAAGGAGGGTTTCCGCAACTTGAATGAGAAACGCACGAAGGATAGAGAGATCAAGCGCCCACGAACAATTACCCGAGTCGGTTGTAAAGCCTCTCTTTCTGTCAAAATGCAAGACTCTGGCAAGTGGATCGTCTCTGGCTTTGTTAGAGAACATAATCACGAGCTCGTTCCACCAGACCAGGTGCATTGCCTTCGCTCTCACAGGCAAATTTCAGGAGCTGCCAAGACTCTCATCGATACTTTACAGGCTGCTGGGATGGGTCCTCGTAGAATTATGTCTGCACTAATTAAAGAGTATGGTGGGATTAGCAAAGTCGGCTTCACAGAGGTGGACTGTAGGAATTACATGAGGAATAATAGGCTGAGAAGTTTAGAAGGTGACATTCAACTTGTTCTTGATTATTTGAGACAGATGCATGCCGAAAACCCTAATTTCTTCTATGCTGTGCAAGGAGATGAGGATCAGTCCATAACCAATGTTTTCTGGGCTGATCCCAAGGCTAGGATGAATTATACATTTTTTGGTGATACTGTAACCTTTGACACCACATACCGATCTAATAGGTATCGGTTACCATTTGCTTTCTTTACTGGTGTAAACCATCATGGGCAACCTGTTCTCTTTGGTTGTGCTTTCCTAATTAACGAATCTGAAGCATCATTTGTGTGGCTTTTCAAGACATGGCTTATGGCCATGTCTGGATGTCCGCCAGTGTCAATAACAACTGATCATGATTCTGCAATTCGGTCAGCCATAATACAAGTCTTCCCCGAGACTCGTCACCGTTTCTGCAAGTGGCACATCTTTAAAAAATGCCAGGAGAAGTTATCTCATATTTTCCTCCAATATCCAAATTTTGAAGCAGAATTTCACAAATGTGTTAACTTGACTGAGTCGACTGAGGAATTTAAGTCTTGCTGGTCAACACTTGTAGATAAATATGATCTCAGGGTCCATGAATGGCTTCAAGCAATATATTCTTCTTGTAGGCAGTGGGTACCTGTATATTTGCGAGACACATTCTTTGCAGAAATGTCCATCACTCAGCGAAGTGATAGCATGAACTCTTACTTTGATGGGTATATAAATGCTTCAACCAATTTAAGTCAGTTCTTTAAGCTCTATGAGAAAGCACTTGAAAGTCGCAATGAGAAAGAAGTGAGAGCGGATTATGACACAATGAATACTTTGCCGGTATTGAGAACCCCATCTCCAATGGAGAAGCAAGCATCTGAGCTTTACACGAGAAAAATTTTCATGAGGTTCCAGGAGGAGTTAGTTGGGACACTTGCATTAATGGCATCCAAAGCCGATGATGATGGGGAGGTCATTACATATCATGTAGCTAAATTTGGAGAGGACCATAAAGGGTATTGTGTTAAATTCAATGTTCTGGAGATGAAAGCAACTTGCAGTTGCCAAATGTTTGAGTTTTCAGGCCTTCTTTGTAGGCATGTTTTGGCAGTCTTTAGAGTTACCAATGTGCTTACTCTCCCATCTCATTATATATTGAAACGTTGGACAAGAAATGCCAAAAGCAATGTAATATTAGAAGAACATGCTTGTGATGTATATACTTACTATTTGGAATCTCATACAGTTAGATATAACACCCTCCGGCATGAGGCTCTTAAATTTGTTGATGAAGGCGCGCGGTCTGCTGAAACTTATGATGTCGCAATAGATGCTTTACAAGAAGCTGCAAAAAGAGTTTCTCAGGGAATACAAAATGAGGGAAAAATTCCTATCAGTAATGGAAAGGTAAGGAGTCACGTGCTGAATGATGAAAGTCATGCTAATTACACAAGTGGGTGCCAGGAAGCAAGCTTGAGCCAGCATATGTCTAAGGATGATTTGGATAAGAATATTAGAAAACTTATGAATGAGCTTGAGTGTGCAAATCGGAAGTGTGAAATTTATCGGTCCAACCTGCTTTCAGTTTTGAAAGCTGTTGAGGATCACAAGTTAGAGTTGTCAGTTAAGGTGGAAAACATCAAGATAAGCATGAAAGATGGCATCTAA 2334 0.4229 MDNEVEVLEFDIGLGGGEGEYDDDDGGGIDEEELGVATGGGEIYLPEVDLLDLEPCEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWIVSGFVREHNHELVPPDQVHCLRSHRQISGAAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRLRSLEGDIQLVLDYLRQMHAENPNFFYAVQGDEDQSITNVFWADPKARMNYTFFGDTVTFDTTYRSNRYRLPFAFFTGVNHHGQPVLFGCAFLINESEASFVWLFKTWLMAMSGCPPVSITTDHDSAIRSAIIQVFPETRHRFCKWHIFKKCQEKLSHIFLQYPNFEAEFHKCVNLTESTEEFKSCWSTLVDKYDLRVHEWLQAIYSSCRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYINASTNLSQFFKLYEKALESRNEKEVRADYDTMNTLPVLRTPSPMEKQASELYTRKIFMRFQEELVGTLALMASKADDDGEVITYHVAKFGEDHKGYCVKFNVLEMKATCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSHYILKRWTRNAKSNVILEEHACDVYTYYLESHTVRYNTLRHEALKFVDEGARSAETYDVAIDALQEAAKRVSQGIQNEGKIPISNGKVRSHVLNDESHANYTSGCQEASLSQHMSKDDLDKNIRKLMNELECANRKCEIYRSNLLSVLKAVEDHKLELSVKVENIKISMKDGI* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0003 777 Coils Coil 720 747 - -
Gso1g0003 777 Pfam FAR1 DNA-binding domain 70 161 IPR004330 -
Gso1g0003 777 ProSiteProfiles Zinc finger SWIM-type profile. 562 598 IPR007527 GO:0008270
Gso1g0003 777 Pfam MULE transposase domain 282 375 IPR018289 -
Gso1g0003 777 Pfam SWIM zinc finger 550 596 IPR007527 GO:0008270
Gso1g0003 777 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 33 750 IPR031052 GO:0006355
Gso1g0003 777 SMART 26again6 573 600 IPR006564 GO:0008270
Gso1g0003 777 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 33 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0003 Gso-Chr1 163199 174957 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso1g0003 MULE 1.6e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0003 - - gmx:100788220 1502.65