Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2208 ATGTGTGGAGGCGCTATCATCTCTGACTTCATTCTCCTTTTTGAGACTTCTAATATCCTCAGGGTTTTTTGGGAGAATTGGCTAAAAAATGGGTCTACCACAGCGAAATCTGTGGCATTCCAAGTTCGAGCTGAGAAATTTGCAAATAGGAAGAGGAAAAATCAGTATAGGGGAATCCGTCAACGCCCTTGGGGAAAATGGGCAGCTGAGATTCGGGATCCTAGAAAGGGGGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTTCCTGAGGAGGCACCAGGTACTTCTGTAAAACGTTCCAAGGTAAATCCACAGGAAAATCTGAGTCACAAGTTCGGTGCTGGCAACAATCACATGGATCTGGTGGAACAGAAACCCCTAGTTAATCAGTATGCTAACATGGCTTCCTTCCCTGGAAGTGGAAATGGGCTCACATCCCTTCCGTCATCTGATGATGTCACCCTTTACTTCAGTTCAGATCAGGGGAGTAATTCATTTGGGTGGAGTGAACAGGGCCCCAAAACTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGATTGTGAATCTCATTTTGTGCAAAATGCCAACCAGCAGCCTAACTCTCAGAATGTGGTATCTATGGAAGATGATTCTGCAAAGAGACTCTCTGAGGAGCGTGTGGATATCGAATCTGAGTTGAAGTTCTTTCAGATGGCTTATCTTGAAGGGAGCTGGGGCGATACTTCGTTGGAATCCTTGCTATCTGGTGACACAACTCAGGATGGTGGAAACCTCATGAACCTTTGGAGCTTTGATGACATTCCTTCCATGTCTAGCGGAGTTTTCTGA 900 0.4611 MCGGAIISDFILLFETSNILRVFWENWLKNGSTTAKSVAFQVRAEKFANRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEAPGTSVKRSKVNPQENLSHKFGAGNNHMDLVEQKPLVNQYANMASFPGSGNGLTSLPSSDDVTLYFSSDQGSNSFGWSEQGPKTPEISSMLSAPLDCESHFVQNANQQPNSQNVVSMEDDSAKRLSEERVDIESELKFFQMAYLEGSWGDTSLESLLSGDTTQDGGNLMNLWSFDDIPSMSSGVF* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2208 299 Coils Coil 236 256 - -
Gso19g2208 299 PANTHER EREBP TRANSCRIPTION FACTOR 29 293 - -
Gso19g2208 299 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Gso19g2208 299 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Gso19g2208 299 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Gso19g2208 299 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Gso19g2208 299 PANTHER DNA-BINDING DOMAIN 29 293 IPR044808 GO:0003700|GO:0009873
Gso19g2208 299 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Gso19g2208 299 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
Gso19g2208 299 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Gso19g2208 299 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2208 Gso-Chr19 50535343 50536727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2208 7 299 AP2-EREBP Transcription Factor Family AT3G14230 44.172 6.97e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso19g2208 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2208 K09286 - gmx:100810376 599.742