Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2199 ATGGAGTTGATGCAACAAGTTAAAGGTAACTATTCTGATAGCAGGGAGGAAGAGGAGGCTGCAGCAGAGATTATCACAATCACAAGGGAACCAGAAAGCAGCAGGTTACACCAACAAGATGCAGCATCCAATTTTGGAAAGAAGCTAGACCTGATGGACTTGTCACTAGGGAGCAGCAAGGAAGAGGAAGAAGGGAAGTTGCAACAAGGAGGTGGAGGTGGAGGAGTGGTTCATCATGCTCATGAAATAGTGGAGAAAGAGAATATGTTTGAGAAAGTGGTGACACCGAGCGACGTAGGGAAGCTGAACAGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCCCTTGACTCCTCATCCAACGAGAAGGGTCTGCTCCTGAATTTCGAGGACCGGAATGGGAAGGTGTGGCGGTTCAGGTATTCCTACTGGAACAGCAGCCAGAGCTATGTGATGACTAAGGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTGGATGCCGGTGACATTGTCTCCTTCCAGCGTGGCCTTGGGGATTTGTATAGACATAGATTGTACATAGATTGGAGGAAAAGGTCTGCTCATCCTCATGCTCATCATCATGCCCCTGATCCTTTGTTTCTTCCCTCTATCAGATGGTACTCTCTCCCTCCCACCATGCCACCTCGCTACCACCACGATCATCACTTTCACCACCATCTCAATTACAACAATCTCTTCACTTTCCAGCAACACCAGTACCAGCTTGGTGCTGCCACAGCCGCTGCCACTGCTGCTCATCATGGTGACCAGAATTCGGGATCTGGGTCACTCTATTACCTAAGGTCCTCCATGTCAATGGGTGGCGGTGATCAAAACTTGCAAGGACGAGGGAACAACATTGTCCCCATGATCATTGATTCTGTGCCGGTTAGCGTTGGCCATCACAACAATCGCCATGGGAATGGGGGCATCACGAGTGGTGGTGCTACTAGTAGTGGAAAAAGACTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCGGCAGAAGATTCCAAAGGCTTGTCCTCGGGTTCGGCAGCACATGTGACGACAGCTGCTTCTTCTTCTCTTCATCAGCGCTTGAGGTTGCCACTGCCACATGAAGACCCACTTTCGTCGTCGTCAGCGAGGTTTGGGGATCACAAAGGGGGCAGTACTGGGACTTCGCTGCTGTTTGATTTGGATCCCTCTTTGCAGTATCATCGGCAGTGA 1242 0.504 MELMQQVKGNYSDSREEEEAAAEIITITREPESSRLHQQDAASNFGKKLDLMDLSLGSSKEEEEGKLQQGGGGGGVVHHAHEIVEKENMFEKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDLYRHRLYIDWRKRSAHPHAHHHAPDPLFLPSIRWYSLPPTMPPRYHHDHHFHHHLNYNNLFTFQQHQYQLGAATAAATAAHHGDQNSGSGSLYYLRSSMSMGGGDQNLQGRGNNIVPMIIDSVPVSVGHHNNRHGNGGITSGGATSSGKRLRLFGVNMECASSAEDSKGLSSGSAAHVTTAASSSLHQRLRLPLPHEDPLSSSSARFGDHKGGSTGTSLLFDLDPSLQYHRQ* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2199 413 SUPERFAMILY DNA-binding pseudobarrel domain 88 178 IPR015300 -
Gso19g2199 413 MobiDBLite consensus disorder prediction 362 413 - -
Gso19g2199 413 ProSiteProfiles B3 DNA-binding domain profile. 90 195 IPR003340 GO:0003677
Gso19g2199 413 MobiDBLite consensus disorder prediction 1 21 - -
Gso19g2199 413 Gene3D - 83 205 IPR015300 -
Gso19g2199 413 SMART B3_2 90 195 IPR003340 GO:0003677
Gso19g2199 413 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 44 364 - -
Gso19g2199 413 CDD B3_DNA 89 177 IPR003340 GO:0003677
Gso19g2199 413 Pfam B3 DNA binding domain 90 194 IPR003340 GO:0003677
Gso19g2199 413 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 364 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2199 Gso-Chr19 50448201 50451077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2199 51 344 RAV Transcription Factor Family AT2G46870 50.000 8.07e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso19g2199 B3 3e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2199 - - gmx:100812161 707.212