Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2198 ATGGAGGACGGGAGTAGGGTTCCGGCGGGGGATGACCCGTCTTACTGGCTGGATGCGTGTGAGGACATATCGTGTGATGATTTCATTGATTTTGATGTCTCTTCCATCGTCGTCTCTGACCAGCCTGACAACCCTTCCAATCAGGACTTCTTCGGTGGCATTGATAAGATTTTGGACAGCATCAAGAACGGTGCTGGTCTCCCTCTCAATCATGCTGCTGCTGAACCACCCAGTAATGTCACTGCAGCAGCATCAGGAGGAGCAGAAGTGTGCTTGCCTTCCAATGCCACTCCGGAGGATTCTTTTGACCATTCTGGTGGCGCTGCTCTGAGTAACGGCTCCAGTAAGCAGTCTAATGGGAACGAAACGGGAGTTTTGGTTGATTATTCTCAGGAAAGGGGGACACCCACTCTGAATGGAGGCCTTGATTTTGATGGTGAAGAAAGGTGCAGCAAAAGGGCTCGGCTTGGTGGCTACAATAATGATCGGCCTTATCATGGTAGAGGGAATTATCAAGGCAAGGAGAGGGAGAGGTGTTTTAGTAATAACAGGAAGAGGCCGCGGGGGGGTAGGGATGAAATTGATAGGAGGGATAAGGATGGTGGTGGAAGGAAAAGAGAACATTGTGGTGCTGTTGGCAGGAGGGATGTTAGAGATAGGGATTGGAGGGATAGAGAAACTAGGGGTTACTGGGAGAGGGATAAGTCTGGTTCCACTGATATGGTCTTTCGCACGGGTGCTTGGGAACCTGATTGTAATCGAGAAGACAAAATGGCGATTGACATGAAACTGGAGAAAAATGGAAACCTTGATAAGAAGTCCGAGGAGGCTAAGGAGAGGGTTCCTGAGGAAAAAGCTAGACAGTATCAGTTGGATGTTCTTGAGCAGGCAAAGAGGAAAAATACTATAGCTTTTCTTGAAACTGGAGCAGGGAAAACCTTAATTGCTGTTCTTCTCATTAAAAGTATACAGGAGAGTTTGCATAAGCAAAATAAGAAAATGCTTGCAGTATTTTTAGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCCGAAGTAATTCGTGAGCGGACTGGTTATCAAGTAGGCCACTATTGTGGAGAAATGGGGCAGGATTTTTGGGATGCTCGAAGGTGGCAGCGTGAATTTGACACCAAACATGTTTTAGTCATGACTGCTCAAATTCTTTTGAACATTTTGAGGCATAGCATAATAAAAATGGAAGCAATCAATCTCTTGATTCTGGATGAGTGCCACCATGCTGTGAAAAAACACCCATATTCACTGGTGATGTCTGAGTTCTACCATACAACACCCAAAGAGAACAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTGAAGGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCTATAGTTTGCACCATTAAAGATCGTAAGGAGCTGGAGAAACATGTACCGATGCCCTCTGAAGTTGTGGTGGAGTATGATAAAGCTGCCAGTTTATGTTATCTACACGAGCAGATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATGTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGCGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTGTTAATTATGCACTTGGTGAACTGGGACAATGGTGTGCATATAAGGTTGCACAATCCTTTTTAGCAGCTTTGCAAAATGATGAAAGGGCCAACTACCAGCTTGATGTCAAGTTTCAGGAAACTTATCTGAGTAAAGTTGTTTCACTTCTGAAATGCCAACTGTCGGAGGGTGCAGTTTCTGACAAAAATGCTGGTATTGATGACTCAGAGAATGGTGCAGTTCAAAGTGGCTCTGAACATGAAGAGATGGAAGAAGGAGAGCTTCCAGACAGTCATGTTGTCTCTGGCGGGGAGCATGTGGATGTTATTATAGGAGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTGCAGGCACTAATCAAAATACTTCTCAAGTATCAGCATACAGAAGATTTCCGTGCAATCATCTTTGTTGAACGTGTTGTGTCTGCATTAGTTCTGCCCAAGGTCTTTGCAGAGCTTCCATCACTTAGTTTTGTGAAGTGTGCAAGTTTGATTGGTCACAATAACAGTCAGGAAATGCGGACCTACCAAATGCAGGATACAATTGCCAAATTCCGTGATGGGCGGGTCACATTGTTGGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGTCAATGCAATGTCGTTATTCGCTTTGACCTTGCAAAGACTGTTCTGGCATACATACAATCCAGGGGACGTGCTAGAAAGCCTGGATCTGATTACATCCTGATGGTTGAGAGGGACAATTTATCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAAACTTTGCGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAGGACACTTCAAGGTTGATCTCTGTTGACACCCGGCCTGGAACAGTTTACCAGGTGAAGTCAACTGGGGCAGTTGTGAGCCTAAATTCTGCTGTAGGTCTTATCCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGCCCTGAATTTATTATGGAGAGGCACGAAAAACCTGGAGGTCCCACAGAATATTCTTGCAAGCTTCAACTACCATGTAATGCACCCTTTGAAAATCTTGAGGGTCCAATATGCAGTTCTATGCGTCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAACTGCATGAGATGGGTGCATTCACTGACATGCTATTGCCTGATAAAGGAAGTGGGGGAGAAAAAGAAAAGGATGAACAAACTGATGAAGGAGATCCACTTCCAGGGACTGCTAGACATAGGGAGTTCTACCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAACAACTCCAAATTGCTTCATCTTTATATGTATGCTGTGAAGTGTGAAAATCTAGGCCATTCAAAGGATCCGTTCTTGACTCAAGTTTCAAATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACTGTGACTACAAAGTCATCTCTTGTCTTTAGGGGGTTGATAAGTATCACTGAGAGTCAGCTGGCATCCCTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACTCCTTGGGATCCTGCAAAGGCATATTTGTTTGTCCCAATGGTTGGCGATAAGTCTGTAGATCCTACGAACCAAATTGACTGGCATCTGGTTGAGACAATAATTGGAGCTGATGCATGGAAGAATCCCCTCCAGAAAGCTCGACCAGATGTTTACCTTGGTACTAATGAGAGAACATTAGGTGGAGACAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGGCAAAAATCACATCCTACCTATGGAATCAGAGGAGCTGTGGCCCAATTTGATGTGGTGAAAGCTTCAGGATTGGTTCCTAACAGAGATGCCATGCAAACACAAAAGCACATCAATATGACTACCAATGGAAAATTAATGATGGCGGATACCTGTACTAATGCAGAGGATCTGATTGGGAAAATTGTAACTGCTGCTCATTCAGGGAAGAGGTTTTATGTTGATTCAATACGCTATGACATGTCAGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTGGAGTACAGTTCATATGCTGATTACTACAAGCAAAAGTATGGGGTTGATTTGATTTACAGGCAGCAACCTCTTATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTTCTGTCCCCTCGATTTGAGCACAGTGAAGCTCATGAAGGTGAATCCGAAGAGACACATGACAAAACTTATTATGTTTTTCTTCCTCCTGAGCTATGCCTTGTACACCCATTGCCTGGATCACTTGTCCGTGGTGCCCAGAGGTTGCCTTCAATAATGAGGAGGGTTGAAAGTATGCTACTTGCAGTTCAACTTAAGAATATGATAAATTATCCTGTCCAGGCTTCAAAGATCTTGGAAGCCTTGACTGCCGCCTCTTGCCAGGAGACATTCTGCTATGAAAGGGCAGAGCTTCTTGGAGATGCTTACCTGAAATGGGTTGTTAGTCGATTTCTTTTCCTAAAATATCCACAGAAACATGAAGGTCAACTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTATTATATCAGTATGCATTAAGTAAAGGGCTTCAATCATATATTCAAGCAGATCGTTTTGCTCCATCCAGATGGGCAGCTCCTGGGGTGCTGCCTGTCTTTGATGAGGATACCAAGGATGGGGAGTCATCTTTGTTTGACCAGGAGCGATCCATTTCCAAGATCGAGAGGATGGATTGTCACACGGATGGATATGAGGATGAGATGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACAGAGTTCTATCCAGTAAGACACTTGCAGATGTTGTGGAAGCACTAATTGGGGTATATTATGTAGAAGGTGGTAAGAATGCTGCCAACCACCTTATGAAATGGATGGGCATTCAAATAGAGTTTGATCCTGATACAATGGATTGTACAAGAAAGCCATTTAATGTTCCAGATAGCATACTTAGGAGTGTTGATTTTGATGCTTTAGAAGGTGCTTTAAATATGAAGTTTAAAGACAGGGGACTGCTGGTAGAATCCATAACTCATGCCTCCAGGCCATCTTCAGGAGTATCCTGTTATCAGCGGTTGGAGTTTGTTGGTGATGCTGTCTTGGATCATCTTATTACCAGGCACTTGTTTTTCACTTACACAAATCTGCCACCGGGACGTCTGACTGACCTTCGGGCTGCTGCTGTAAACAATGAAAATTTTGCGCGTGTTGCAGTTAAACACAACCTTCATGTGCATCTCCGGCATGGATCCAGTGCCCTAGAAAAACAGATTAAAGAATTTGTTAAGGAAGTTCAAGATGAATTGTCAAAGCCAGGTTTTAATTCCTTTGGTCTGGGAGACTGCAAAGCCCCCAAGGTCCTTGGTGACATTCTTGAATCTATTGCAGGTGCCATTTTTCTTGACAGTGGGAGGGATACTACTGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTTACCCCTGAGACTCTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGGTGCCAGCAGCAAGCTGAAGGCTTAGAGTATAAAGCAAGTCGTATTGGCAATTTGGCCACTGTTGAAGTATTCATTGATGGGGTGCAAGTAGGGGCTGCTCAAAATCCACAGAAAAAAATGGCGCAGAAATTAGCTGCAAGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAGGTGGGAAAAACTCAGGAAAAGAATGATGACAATGGGAAGAAGAATGGAAACCAAACATTTACTAGGCAAACATTAAATGATATCTGTTTACGAAGAAATTGGCCTATGCCATTTTACAGGTGTGTGAATGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATTTGCAGTGCGTGTCAATACTACTGATAAAGGATGGACAGATGAATGTGTTGGAGAGCCAATGCCAAGTGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTAGAACTACTGAACAAATTATACTCGTGA 5838 0.439 MEDGSRVPAGDDPSYWLDACEDISCDDFIDFDVSSIVVSDQPDNPSNQDFFGGIDKILDSIKNGAGLPLNHAAAEPPSNVTAAASGGAEVCLPSNATPEDSFDHSGGAALSNGSSKQSNGNETGVLVDYSQERGTPTLNGGLDFDGEERCSKRARLGGYNNDRPYHGRGNYQGKERERCFSNNRKRPRGGRDEIDRRDKDGGGRKREHCGAVGRRDVRDRDWRDRETRGYWERDKSGSTDMVFRTGAWEPDCNREDKMAIDMKLEKNGNLDKKSEEAKERVPEEKARQYQLDVLEQAKRKNTIAFLETGAGKTLIAVLLIKSIQESLHKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKENRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKCSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQETYLSKVVSLLKCQLSEGAVSDKNAGIDDSENGAVQSGSEHEEMEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERDNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEKEKDEQTDEGDPLPGTARHREFYPEGVADILKGEWILSGKDACNNSKLLHLYMYAVKCENLGHSKDPFLTQVSNFAVLFGNELDAEVLSMSMDLFIARTVTTKSSLVFRGLISITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVGDKSVDPTNQIDWHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDAMQTQKHINMTTNGKLMMADTCTNAEDLIGKIVTAAHSGKRFYVDSIRYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYRQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEETHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVQASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQERSISKIERMDCHTDGYEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWMGIQIEFDPDTMDCTRKPFNVPDSILRSVDFDALEGALNMKFKDRGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDILESIAGAIFLDSGRDTTVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVGKTQEKNDDNGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS* 1946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2198 1945 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1782 1845 IPR014720 -
Gso19g2198 1945 SUPERFAMILY RNase III domain-like 1607 1778 IPR036389 GO:0004525|GO:0006396
Gso19g2198 1945 MobiDBLite consensus disorder prediction 967 994 - -
Gso19g2198 1945 Gene3D - 280 524 IPR027417 -
Gso19g2198 1945 ProSiteProfiles Ribonuclease III family domain profile. 1407 1567 IPR000999 GO:0004525|GO:0006396
Gso19g2198 1945 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1867 1942 IPR014720 -
Gso19g2198 1945 Gene3D - 1873 1943 - -
Gso19g2198 1945 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 881 976 IPR005034 GO:0016891
Gso19g2198 1945 CDD DEXHc_dicer 285 484 - -
Gso19g2198 1945 Pfam Helicase conserved C-terminal domain 689 806 IPR001650 -
Gso19g2198 1945 SMART DRBM_3 1868 1941 IPR014720 -
Gso19g2198 1945 SMART DRBM_3 1783 1844 IPR014720 -
Gso19g2198 1945 SMART helicmild6 722 808 IPR001650 -
Gso19g2198 1945 MobiDBLite consensus disorder prediction 970 994 - -
Gso19g2198 1945 SUPERFAMILY PAZ domain 1241 1364 IPR036085 GO:0005515
Gso19g2198 1945 ProSitePatterns Ribonuclease III family signature. 1643 1651 IPR000999 GO:0004525|GO:0006396
Gso19g2198 1945 CDD DSRM_DCL_plant 1873 1934 - -
Gso19g2198 1945 Pfam Dicer dimerisation domain 881 969 - -
Gso19g2198 1945 MobiDBLite consensus disorder prediction 647 663 - -
Gso19g2198 1945 SUPERFAMILY dsRNA-binding domain-like 1738 1861 - -
Gso19g2198 1945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 820 IPR027417 -
Gso19g2198 1945 MobiDBLite consensus disorder prediction 91 122 - -
Gso19g2198 1945 MobiDBLite consensus disorder prediction 1846 1860 - -
Gso19g2198 1945 Pfam PAZ domain 1245 1384 IPR003100 GO:0005515
Gso19g2198 1945 SMART PAZ_2_a_3 1224 1388 IPR003100 GO:0005515
Gso19g2198 1945 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 293 470 IPR014001 -
Gso19g2198 1945 ProSiteProfiles PAZ domain profile. 1224 1364 IPR003100 GO:0005515
Gso19g2198 1945 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 693 853 IPR001650 -
Gso19g2198 1945 Gene3D - 1780 1858 - -
Gso19g2198 1945 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1867 1940 - -
Gso19g2198 1945 Gene3D - 679 845 IPR027417 -
Gso19g2198 1945 Gene3D Ribonuclease III domain 1604 1777 IPR036389 GO:0004525|GO:0006396
Gso19g2198 1945 Gene3D Ribonuclease III domain 1385 1582 IPR036389 GO:0004525|GO:0006396
Gso19g2198 1945 Gene3D paz domain 1241 1362 - -
Gso19g2198 1945 SUPERFAMILY dsRNA-binding domain-like 1871 1941 - -
Gso19g2198 1945 SMART ultradead3 282 485 IPR014001 -
Gso19g2198 1945 MobiDBLite consensus disorder prediction 168 215 - -
Gso19g2198 1945 Gene3D Dicer dimerisation domain 876 978 IPR038248 -
Gso19g2198 1945 CDD RIBOc 1403 1589 IPR000999 GO:0004525|GO:0006396
Gso19g2198 1945 MobiDBLite consensus disorder prediction 636 663 - -
Gso19g2198 1945 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 244 1943 - -
Gso19g2198 1945 Pfam Ribonuclease III domain 1643 1756 IPR000999 GO:0004525|GO:0006396
Gso19g2198 1945 Pfam Ribonuclease III domain 1421 1567 IPR000999 GO:0004525|GO:0006396
Gso19g2198 1945 MobiDBLite consensus disorder prediction 155 215 - -
Gso19g2198 1945 CDD SF2_C_dicer 686 816 - -
Gso19g2198 1945 Pfam Type III restriction enzyme, res subunit 292 452 IPR006935 GO:0003677|GO:0005524|GO:0016787
Gso19g2198 1945 ProSiteProfiles Ribonuclease III family domain profile. 1608 1756 IPR000999 GO:0004525|GO:0006396
Gso19g2198 1945 SUPERFAMILY RNase III domain-like 1380 1586 IPR036389 GO:0004525|GO:0006396
Gso19g2198 1945 SMART riboneu5 1403 1587 IPR000999 GO:0004525|GO:0006396
Gso19g2198 1945 SMART riboneu5 1623 1779 IPR000999 GO:0004525|GO:0006396
Gso19g2198 1945 CDD PAZ_CAF_like 1217 1366 - -
Gso19g2198 1945 PANTHER DICER-RELATED 244 1943 - -
Gso19g2198 1945 MobiDBLite consensus disorder prediction 107 122 - -
Gso19g2198 1945 CDD RIBOc 1624 1779 IPR000999 GO:0004525|GO:0006396
Gso19g2198 1945 MobiDBLite consensus disorder prediction 1846 1866 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2198 Gso-Chr19 50413633 50426257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2198 705 848 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 3.34e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2198 K11592 - gmx:100811631 3808.07