Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2196 ATGGTTATATACTACTCCATTTTGGTCTATTTATTACTACTTCACTTGACTCACTCCCTCTTCTTCCTTAGATACAATACAATGTCACCTATCATTGTCCTCCTCTCTTTTCTTCTTCTTCTTCTGTGCTTCCCTTTTTCTTGTTCCCTCCAACACCATCAATCCCCTTTCCTTCCAAACTCCTGCAATAATGTAACATGCGGGGACCTCCATGTTCCCTTTCCTTTCCATGTCAACACTTCATGTGACTCAATTTCCAGCGCCTTCCATCTCTCGTGCTCAAATTCCTCTGCCCTTTTACTCAGAATTGGCCCAGTGAGCTACACAGTCTTGGAATTCTTCCCAGATGGTGTGCTGGTCGACTTTCCAGGCTCATCATCCTGTAGACAGTACTATGACTTGAACTCTTTTGGCAGAAATTTTGCAGGGAAGGACTACTTTGGCTTGTCGGTTGATAATGTTATTGGGCTCTATGACTGTGAGGATTCTTCTCTGTGCAAAGCAGATTGTGAAACCATTGACTTGCCTGGTTGTGATGGAAAGGGTGGAGGCTCCCTTGCCTGCTGCTATCCACTCTCTGACCATACCATATGGCATGTTGGAGATGGCTTTTCGGTGTTTTCTCAGTTTGGATGCAGAGGGGTTTCTAGTTGGGCTGTTCTGAGAGGCTCCACTTGGGGAAAACGAGGCGTCAAGTTGGAATGGGCACTTCCCAGGAACTCCTCTTCTGAAGTTTGTGCTACGAATGCTAACATTGCCAATTCTACAGCAGTTCAAGGAGGCGTCAGATGTGTCTGCCAAAATGGATATGTTGGTGATGGTTTTGCTAATGGAACTGGATGTTTGCAGGCCTGCATAAAGGATGGAAAGGAAGCATATGGAAGTGACTGCTACATCAAAAGGCATGATCAGAGGAAATTTGTTATGATCGCCGGAATCATTGGCCCAGTTCTCATTGTTGCTTCCCTGGTTGCACTATTTTATCTTCTTAAAAGGCCAACAAAACCAGGGATGTTTTACACAGAGCAGGCTTACTATCAAAACATTACAATCCCCAAAGCTTGTAAAACTCGATTATTCAGCTTCCATGAGCTAGAGGAAGCCACTAAAGGTTTTGAAGAGGGTCAGAAACTAATGCATGACAATAATGGGACAATTTTCGCTGGAGTTTTAGGGGATGAATCTCACATAGCTGTCCACAAGTTACAGTGCCAGAAGAATGACTTGATACAAGTCCTGTCACAAATCGAGGTTCTATCTTCTATTGTGCATAGAAACATGGCTCGCATTCTTGGATGCTGTATTGAATCTGGCAACACTCTAGTAGTTTATGAGTATCCTTCCAATGGTACCTTGGAGGAACATTTACATCAAAGCAAAGGACAACAACTTCGTTTAGATTGGTATAGGAGATTGACTATTGCTGCAGAAACAGCTAGTGTTCTTGCATTCTTACACTACGAGAACAATCCTCCCATACTTCACCATAACCTTAAATCTGCCTGCATCTTCCTAGATGATGACTATTCTGTCAAGATTGCAGGATTTGGTCTGATCAACTCCAATTTTTACTATGGTTCTCACTTACACAAGAACTATGAAGCATTTGACATCTGCAAAAATGATGTTTACGATATGGGTGTGTTGCTTCTTGAGATTATCTCAGGCTCAAATCAGTTGGATTCACCAACTTTGGCTTTACAGCATGTAAGGGCTGGAAAATTTGAAGAAATTTTGGACCCATTTCTTTGCTATGATGAGCAACCACATTACCGCCAAGAGCAAATGCAAATAATTGCAGATCTAGCTACAAGGTGCCTGTTATTTGGGGTAGATGGAAGGCTAGGAATGATAGATGTTGTGAGGGAGTTAGTACACATGACTAAAGAAAGTCTTGATGGAGGAATTATGAAAGGACCTGCACTGGAGGAGACATTCTCAAATTCAAGCCTTCTTCAGATGATATCAATGTCTCCTGATTCTATGAGTGTCCCTTGA 1998 0.4249 MVIYYSILVYLLLLHLTHSLFFLRYNTMSPIIVLLSFLLLLLCFPFSCSLQHHQSPFLPNSCNNVTCGDLHVPFPFHVNTSCDSISSAFHLSCSNSSALLLRIGPVSYTVLEFFPDGVLVDFPGSSSCRQYYDLNSFGRNFAGKDYFGLSVDNVIGLYDCEDSSLCKADCETIDLPGCDGKGGGSLACCYPLSDHTIWHVGDGFSVFSQFGCRGVSSWAVLRGSTWGKRGVKLEWALPRNSSSEVCATNANIANSTAVQGGVRCVCQNGYVGDGFANGTGCLQACIKDGKEAYGSDCYIKRHDQRKFVMIAGIIGPVLIVASLVALFYLLKRPTKPGMFYTEQAYYQNITIPKACKTRLFSFHELEEATKGFEEGQKLMHDNNGTIFAGVLGDESHIAVHKLQCQKNDLIQVLSQIEVLSSIVHRNMARILGCCIESGNTLVVYEYPSNGTLEEHLHQSKGQQLRLDWYRRLTIAAETASVLAFLHYENNPPILHHNLKSACIFLDDDYSVKIAGFGLINSNFYYGSHLHKNYEAFDICKNDVYDMGVLLLEIISGSNQLDSPTLALQHVRAGKFEEILDPFLCYDEQPHYRQEQMQIIADLATRCLLFGVDGRLGMIDVVRELVHMTKESLDGGIMKGPALEETFSNSSLLQMISMSPDSMSVP* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2196 665 Gene3D Phosphorylase Kinase; domain 1 339 446 - -
Gso19g2196 665 Pfam Wall-associated receptor kinase galacturonan-binding 62 113 IPR025287 GO:0030247
Gso19g2196 665 Pfam Protein tyrosine and serine/threonine kinase 375 555 IPR001245 GO:0004672|GO:0006468
Gso19g2196 665 Gene3D Transferase(Phosphotransferase) domain 1 448 634 - -
Gso19g2196 665 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 72 660 IPR045274 GO:0007166
Gso19g2196 665 ProSiteProfiles Protein kinase domain profile. 372 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g2196 665 PANTHER OS10G0351500 PROTEIN 72 660 - -
Gso19g2196 665 SUPERFAMILY Protein kinase-like (PK-like) 355 624 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2196 Gso-Chr19 50406601 50410012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2196 25 627 Receptor kinase-like Gene Family AT2G23450 29.186 5.83e-62 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gso19g2196 PK_Tyr_Ser-Thr 6.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2196 - - gmx:100810557 1329.31