Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2195 ATGCATGATCGCACCTTCAACTCTCTTCTTCTTCACCATGGCTTTACTTCAAGTAGCATCACCTTATCATCAGCTTCTGCTTGCTTTCACCACAACGGCCTCACTATTTGGTGTGTTCCATGTCACAAAAAACGAAAGGAGATATTCCTTTTACCCACTCCTCGTCAGGGAAGATCTGAAGCAGCGCTAGCTAGCAGCACACGTCCTCTAATGGACGCCGACTCCTCTGGAGAAGAAGTGCTTATTAAAACAAGAAAGCCATATACTATCACAAAGCAAAGAGAACGATGGACAGAGGAGGAACATAACAGATTTCTAGAAGCCTTGAAGCTATACGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCTGTGCAAATCAGGAGTCATGCTCAGAAATTCTTTACAAAGTTGGAGAAAGAGGCCTTTGTAAAGGGTGTTCCAATAGGACAAGCTCTTGATATAGACATCCCCCCTCCACGGCCAAAAAGAAAACCAAACAATCCTTATCCCCGGAAGACCAATGTTGGTGGTGCCCCAACATTACATAGCGGAGCAAGGCATGGAAAGCCTCTCATTTCAATTGTATCTTCACTTGGTAAACAAGCATTGGGCTTGGAGAAAGAACCCCTTCCAGAGAAGCATGATGTCGACCTAAGGCCATCAACCGTAAAAGAAAATAAGGACCAAAGCTGCTCAAAAGTATTTACCATTCTCCAAGAGGCACCCTGTTCATCTGTATCTTCCGCCAACAAGAATTCAACATCAATATTAGTGCCGCTGAGAAATTCATGTGCCCTAAGGAAGTTTATACCTTCGGTGAAAGATGTGATAACTCAAGATGAAACCAACGACTCTTTTGTTACTGATGATCTTGAAAATCAGAAGTTGGAGATAGATGATGGCAAGCACACTCAAAAGTCTAATGGCACTTGTAAAGTCTCTAAGTCGGAGAATTCTGGTGCTTCAGAATTGGTTCAAACTGAGAAAACAGATGGTCTTAATTGTGCATTAACAATTGAAGGGGTGCAAGGCAATCAGAATTACCCAAGACATGTCCCTGTGCACGTTGTTGATGGGAACCTTGGAACTAGTACTCAAAATCCATCCCCAGATATGGTGTTTCAAGACTCCATATTTCAGCCGAAAGGAGGGGTTAATGGGCAACCTAACCTTGTCACCATTTCTGCTACATCAAACATAAGTGAAAGTCAAAACAACACTGCACGGTCCTCTATTCATCAATCATTTCCTCCTTGTCCTACCTTCACACAGGATGATTATCATTCATTTCTTCAGGTGTCCTCCACATTTTCAAGTCTTATTGTCTCTACCTTGCTACAAAACCCTGCAGCCCATGCTGCAGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATGCAGAAACTTCCGCAGATTCTCCCATGTGCACTCCAGATTTTCCATCAAGACAAATTGGCTCGCCTCCAAGTGTGACAGCTATTGCAGCTGCTACAGTAGCTGCCGCAACCGCATGGTGGGCTGCCCATGGACTGCTTCCTTTGTGTGCTCCGCTCCATACAGCTTTTGCCTGTCCTCCTGCATCAGCGATTGCAGTTCCATTAATGAATATTGATGAATCACCACAAAAAACAGAACAAGAAGAGATTAAACCACAAAATTCTTCTCTGCAAGATCAGATACTGGATCCAGAACACTCAGAAGCTCAACATTCAGCTCCTAAGTCCCCAGCTGTTTTTTCATCCAAATCTGAGGAGAGGGGAGATGCCAATTTAAATACTTCACCAAAGGCTACTAATCATGAGACGAATCAGGTCATTTCTGAGAACCCCGATTCCAACAAAATGAAGGGCAGAAAACCTGTAGACCGTTCCTCATGTGGTTCCAACACAACCTCTAGCAGTGAAGAGACCGAGTTACTACTGAAGGATGAGAAAGAAAAGGAAGAGCCCAAAACACCTGATGCAAACATTTTAGATACCGAGCTTAGTAATCGTCGTAGTAGAAGCATTAACAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGGGGCGTCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGCTTTTCACCTACTCATGATTTGATAAATGAGGATAATCAGATAGACAGCATCAAGGATAACGACCAAAACACAGACTACAAAGATGAAGACCTTGAAAGCAAGAAATGCAGTTCTAATAGTGATGGGGTGCAGAAAAATCTGCTATTTGTCAAAGATAACAATGAGGAGGAGGGACTGCTAATCATAGGTCTTGGACCAGGAAAGCTAAAGACTCGTCCAACAGGGTTTAAACCTTACAAAAGATGTTCGGTAGAGGCCAATGAAAACAGGATCGGAACAGCCTGCAACCAAGGTGAAGAAAAAGGTCCTAAGAGAATACGCTTGAATGGGGAGGCTTCAACTTGA 2460 0.4366 MHDRTFNSLLLHHGFTSSSITLSSASACFHHNGLTIWCVPCHKKRKEIFLLPTPRQGRSEAALASSTRPLMDADSSGEEVLIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAFVKGVPIGQALDIDIPPPRPKRKPNNPYPRKTNVGGAPTLHSGARHGKPLISIVSSLGKQALGLEKEPLPEKHDVDLRPSTVKENKDQSCSKVFTILQEAPCSSVSSANKNSTSILVPLRNSCALRKFIPSVKDVITQDETNDSFVTDDLENQKLEIDDGKHTQKSNGTCKVSKSENSGASELVQTEKTDGLNCALTIEGVQGNQNYPRHVPVHVVDGNLGTSTQNPSPDMVFQDSIFQPKGGVNGQPNLVTISATSNISESQNNTARSSIHQSFPPCPTFTQDDYHSFLQVSSTFSSLIVSTLLQNPAAHAAASFAATFWPYANAETSADSPMCTPDFPSRQIGSPPSVTAIAAATVAAATAWWAAHGLLPLCAPLHTAFACPPASAIAVPLMNIDESPQKTEQEEIKPQNSSLQDQILDPEHSEAQHSAPKSPAVFSSKSEERGDANLNTSPKATNHETNQVISENPDSNKMKGRKPVDRSSCGSNTTSSSEETELLLKDEKEKEEPKTPDANILDTELSNRRSRSINNLTDSWKEVSEEGRLAFQALFSREVLPQSFSPTHDLINEDNQIDSIKDNDQNTDYKDEDLESKKCSSNSDGVQKNLLFVKDNNEEEGLLIIGLGPGKLKTRPTGFKPYKRCSVEANENRIGTACNQGEEKGPKRIRLNGEAST* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2195 819 ProSiteProfiles Myb-like domain profile. 89 139 IPR001005 -
Gso19g2195 819 MobiDBLite consensus disorder prediction 642 660 - -
Gso19g2195 819 MobiDBLite consensus disorder prediction 157 191 - -
Gso19g2195 819 MobiDBLite consensus disorder prediction 568 668 - -
Gso19g2195 819 CDD SANT 96 139 IPR001005 -
Gso19g2195 819 MobiDBLite consensus disorder prediction 312 327 - -
Gso19g2195 819 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Gso19g2195 819 PANTHER PROTEIN LHY 72 801 - -
Gso19g2195 819 MobiDBLite consensus disorder prediction 800 819 - -
Gso19g2195 819 SUPERFAMILY Homeodomain-like 88 144 IPR009057 -
Gso19g2195 819 MobiDBLite consensus disorder prediction 306 327 - -
Gso19g2195 819 MobiDBLite consensus disorder prediction 716 741 - -
Gso19g2195 819 MobiDBLite consensus disorder prediction 708 743 - -
Gso19g2195 819 PANTHER SWI/SNF COMPLEX-RELATED 72 801 - -
Gso19g2195 819 Pfam Myb-like DNA-binding domain 94 137 IPR001005 -
Gso19g2195 819 Gene3D - 96 143 - -
Gso19g2195 819 MobiDBLite consensus disorder prediction 590 616 - -
Gso19g2195 819 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 143 IPR017930 -
Gso19g2195 819 SMART sant 93 141 IPR001005 -
Gso19g2195 819 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 92 141 IPR006447 GO:0003677
Gso19g2195 819 ProSiteProfiles SANT domain profile. 92 143 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2195 Gso-Chr19 50387377 50400803 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso19g2195 Myb_DNA-binding 3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2195 K12133 - gmx:780540 1397.1