Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2189 ATGGCATTGGCAGCTAATGCTACTCCCTCTCTGGCCTTCGCTTCTTCCTCCTTACTGAACCACAATCCCCAATTTGGTGCTGCTCCCAAACGATTCGTTTCTTCTTCTTCTTCTTCTTTGTGCCTTGCCGCGGGGCTCAGCTCCAAGGCTAGGGCCTTCAGTTTCTCTGCCTCGGCTGCGGCCCTTGACGGAGAAGAACTCGCGGTGGAAGAAACGTGGAAGCTAGCGAGACCAACCGAAGTGTACGTCTGCAACCTTCCACGAAGCTGTGACACGGAGCAACTACTTCATATGTTCAACCCTCACGGAACCGTTCTCTCTGCCCAGGTTTATTGCTTATTTAACATCCTACTATCTTCTGTTTTCTTGTTCTTTTGTTTATCCCTCGTGATTTCTCTTTTTCAGGTTTGCCGGAGTGCGGAAACTGGTGAAAGTAGAGGGAGTGCTTATGTCACAATGGCTTCTATTAACTCGGCAAGAAAAGCAATTGCGGCATTGGATGCATCGGATTTTGGTGGGCGTGAAGTGCGGGTTAGATTTTCAGCTGAGATGAATCCCAAGAGAAGGAATCTTGAAACAATGAACTCATCACCCAAGAGAGTTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGCAATCTTTCCAGGAGTGCGGGGCCTCAAGACTTGAAACAACTTTTTGGTAGATTTGGTATTGTAGCTAGTGTAAGGGTGTTGCAAGATTTGAGGAAAGGGAATCGCAGGGTCTATGCGTTTGTCTCTTATCATTCAGAGTCAGAACGTGATGCAGCAATGTCGCTCAATGGAACAGAATTTTTTGGTCGTGTGCTAGTGATTAGAGAGGGTGTAGAGAGAGAGGACTGA 867 0.4683 MALAANATPSLAFASSSLLNHNPQFGAAPKRFVSSSSSSLCLAAGLSSKARAFSFSASAAALDGEELAVEETWKLARPTEVYVCNLPRSCDTEQLLHMFNPHGTVLSAQVYCLFNILLSSVFLFFCLSLVISLFQVCRSAETGESRGSAYVTMASINSARKAIAALDASDFGGREVRVRFSAEMNPKRRNLETMNSSPKRVIYYEGPHKLYVGNLSRSAGPQDLKQLFGRFGIVASVRVLQDLRKGNRRVYAFVSYHSESERDAAMSLNGTEFFGRVLVIREGVERED* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2189 288 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 69 288 - -
Gso19g2189 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Gso19g2189 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 177 IPR000504 GO:0003723
Gso19g2189 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676
Gso19g2189 288 SMART rrm1_1 209 281 IPR000504 GO:0003723
Gso19g2189 288 SMART rrm1_1 80 179 IPR000504 GO:0003723
Gso19g2189 288 SUPERFAMILY RNA-binding domain, RBD 78 195 IPR035979 GO:0003676
Gso19g2189 288 Gene3D - 65 205 IPR012677 -
Gso19g2189 288 Gene3D - 206 288 IPR012677 -
Gso19g2189 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 183 IPR000504 GO:0003723
Gso19g2189 288 PANTHER OS02G0815200 PROTEIN 69 288 - -
Gso19g2189 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2189 Gso-Chr19 50350289 50351757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2189 70 288 Eukaryotic Initiation Factors Gene Family AT1G22760 24.215 8.41e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2189 - - gsj:114400287 537.339