Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2181 ATGTCAGAAGGTGCAGAAATTGATGAGCGTGTGGACCTTGATGAGGAAAATTATATGGAAGAGATGGATGATGATGTTGAAGAACAAATAGACGATGATGGAGTGGATGGAGTTGAAGAAGAAAATGCTGAAGGTAGTTTTGAAGAAGATGAATATGAGGACTCAGCTGCTGAGGCTGGTGGGAAAGACCAGTTGCCTGAAGCAGAAAAAAGTGACATTGCTACTGAATTTGGGGATGATGAGCAAAAATTGTCTTTCATTGATGAAGATGAGAAAGAGAAGCATGATGAACTTCTTGCCCTTCCACCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATGTATGTGAAGATGATTTAAGGGAATTGTGCGAGCCCATGGGTGATATTCTTGAGGTGCGATTAATGAAAGACAGGGACACTGGAGAAAACAAGGGTTATGCCTTTGTGGCTTTTAAAACAAAAGAGGTAGCGCAAAAGGCTATTGAGGAGATACACAGCAAGGAATTTAAGGGGAAAACTTTGAGGTGTTCACTTTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAAACTTGGACTGAAGATGATTTTAGGAAAGTTGTTGAAGGTGTTGGTCCTGGGGTTGAAACCATTGAGCTCATAAAGGACCCTCAAAATCCTAGTAGGAACCGTGGGTTTGCGTTTGTTTTGTATTACAATAATGCATGTGCTGATTATTCGCGGCAAAAGATGGCAAGTTCTAGCTTTAAGCTGGATGGCAACACCCCGACTGTCACATGGGCAGATCCAAAGAACTCACCTGACCATTCTGCTTCTTCACAGGTTAAAGCTCTATACGTCAAAAACATTCCCGAGAATGTTACCACTGAACAATTGAAGGAACTATTCCGCCGTCATGGAGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGATACAGAGAAATATGAAATTGATGGCCAAATGCTTGAAGTTGTTCTTGCTAAGCCTCAAGCTGATAAAAAACCTGATGGAGGTTATGCCTACAATCCTGGACTTCATCCAAACCATATTCCACATCCTGCATATGGTAACTTTTCTGGAAATCCTTATGGCTCTTTAGGGGCTGGATATGGTGTTGCTGCTGGTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAAATGGTTCCAATGGTGTTACCAGACGGTCGAATTGGCTATGTTCTTCAACAACCTGGTGTACAAGTGCCAGCAACCCGACCCCGCAGAATTGATCGGAGCAATGGTCCAAGTGGGCAGCCAGGGCGAGGAGGAGGAGGAGGTAGTGGCAATGATGAAGGCAATCGTAGTAGAAGGTATCGACCCTATTAG 1452 0.4332 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGVEEENAEGSFEEDEYEDSAAEAGGKDQLPEAEKSDIATEFGDDEQKLSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRELCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMASSSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQADKKPDGGYAYNPGLHPNHIPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPATRPRRIDRSNGPSGQPGRGGGGGSGNDEGNRSRRYRPY* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2181 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Gso19g2181 483 MobiDBLite consensus disorder prediction 8 56 - -
Gso19g2181 483 Gene3D - 8 186 IPR012677 -
Gso19g2181 483 MobiDBLite consensus disorder prediction 1 80 - -
Gso19g2181 483 CDD RRM3_hnRNPR_like 280 358 - -
Gso19g2181 483 Gene3D - 269 378 IPR012677 -
Gso19g2181 483 SUPERFAMILY RNA-binding domain, RBD 103 270 IPR035979 GO:0003676
Gso19g2181 483 Gene3D - 187 267 IPR012677 -
Gso19g2181 483 MobiDBLite consensus disorder prediction 57 80 - -
Gso19g2181 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 349 IPR000504 GO:0003723
Gso19g2181 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 252 IPR000504 GO:0003723
Gso19g2181 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Gso19g2181 483 CDD RRM_SF 108 180 - -
Gso19g2181 483 PANTHER GEO13361P1-RELATED 2 481 - -
Gso19g2181 483 SUPERFAMILY RNA-binding domain, RBD 275 372 IPR035979 GO:0003676
Gso19g2181 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
Gso19g2181 483 MobiDBLite consensus disorder prediction 440 483 - -
Gso19g2181 483 SMART rrm1_1 107 180 IPR000504 GO:0003723
Gso19g2181 483 SMART rrm1_1 187 264 IPR000504 GO:0003723
Gso19g2181 483 SMART rrm1_1 282 354 IPR000504 GO:0003723
Gso19g2181 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Gso19g2181 483 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2181 Gso-Chr19 50278525 50285546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2181 108 450 Eukaryotic Initiation Factors Gene Family AT2G23350 24.603 1.15e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2181 K13161 - gmx:100800974 878.241