Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2178 ATGTTGGGCTTAAATTTCAAACAAGTTCCGCAGACATACGATGAAGGTCAGCACGAGGGAAGGCAAGCGGTGAGCAAAGAAGACATACAGATACGAAAAGGTTGCTTGAAAATCAAGGTGGGTCAAGGCGAAGAGCAGCAGAAAGTAACGGTGCCCGTGAATTACCTGAAGCACCCTCTCTTTGTTCAGCTTCTGAAGGAGGCAGAGGAAGAGTATGGTTTTTCACAGAAAGGAACCATAACTATCCCTTGCCAAGTGGCGGAATTTAAGAACGTTCAACACTTGATTCATACAGAGAGGTCCCTCCACCACCACCATCACCTCGTTGCCACCTGCTTCAAGGCTTGA 348 0.4741 MLGLNFKQVPQTYDEGQHEGRQAVSKEDIQIRKGCLKIKVGQGEEQQKVTVPVNYLKHPLFVQLLKEAEEEYGFSQKGTITIPCQVAEFKNVQHLIHTERSLHHHHHLVATCFKA* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2178 115 Pfam Auxin responsive protein 25 95 IPR003676 GO:0009733
Gso19g2178 115 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY 17 108 - -
Gso19g2178 115 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 17 108 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2178 Gso-Chr19 50251602 50252237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2178 31 101 Calmodulin-binding Proteins AT4G31320 42.254 7.95e-14 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2178 K14488 - gmx:100500512 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2178 19 50251602 50252237 Gso7g0463 7 4531751 4532741 PCT
Gso19g2178 19 50251602 50252237 Gso16g0169 16 1887363 1888364 PCT
Gso7g0463 7 4531751 4532741 Gso19g2178 19 50251602 50252237 PCT
Gso16g0169 16 1887363 1888364 Gso19g2178 19 50251602 50252237 PCT