Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2165 ATGGGTTTCCATTGTGAGGAAAAGGATAGCATACATCTGCAACCTTGCGCAGCTTGCAGGATGTTACGCCGCAGATGTGACAGTAAGTGCGTACTTGCTCCATATTTCCCAACCAATGAGGTTGATAAATTTGCTGGAGTGCATAGAGTGTTCGGTGCTAGCAACGTTATCAAAATGATTCAGATGGTCGAGGAAACAAAGAGAGAGGATGCTGTTAAAGCGATGGTGTACGAGGCGACGGCAAGGCTCAGAGACCCAGTTTATGGCAGTGCTGGAGCTATTTATCAGTTACAAAAGATGATTGAGGAACTGAAGGCACAGCTGGAGTCCATAAAAACTCGTGTGTCAGAACAAAAAGACCAGTTGTTGAGTATTCGTAATAACAACGTTAACGCTTGTGGCCACCTTGATCAATATCCATTTCCCGTCAATGTCGACCCCATCTTTGATCATGATCATCTCATGGTCTCAGATCCATTTGATTTTCCTGTAGAAGGTGGTGGCTGGGTATTTAGCAATATGTCAACGCCCTCCTTATAA 540 0.4444 MGFHCEEKDSIHLQPCAACRMLRRRCDSKCVLAPYFPTNEVDKFAGVHRVFGASNVIKMIQMVEETKREDAVKAMVYEATARLRDPVYGSAGAIYQLQKMIEELKAQLESIKTRVSEQKDQLLSIRNNNVNACGHLDQYPFPVNVDPIFDHDHLMVSDPFDFPVEGGGWVFSNMSTPSL* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2165 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 8 158 - -
Gso19g2165 179 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Gso19g2165 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 158 - -
Gso19g2165 179 Coils Coil 94 128 - -
Gso19g2165 179 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2165 Gso-Chr19 50114757 50115821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2165 11 115 AS2 family AT2G28500 62.857 9.50e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso19g2165 LOB 2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2165 - - gmx:100803085 370.933