Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2159 ATGGACCATCAACCTCCACCGTACCCCGCCGCCGCCTCCGCCGCAACGGACAACCCTCGGGGAGGCACGCGCCACCCCGTGTACCGCGGCGTCCGCAAGCGCCGGTGGGGCAAATGGGTCTCCGAAATCCGGGAGCCACGGAAGAAGAACCGCATATGGTTGGGGTCGTTTCCGGTGCCGGAGATGGCGGCGCGAGCATACGACGTCGCAGCCTACTGCCTCAAAGGCCGGAAGGCGCATCTCAACTTTCCCGACGAGGTTGACTCCCTGCCGCTTCCGTCGTCCCGCTCGGCCCGAGATATTCAGGCCGCCGCAGCCCAGGCGGCGCGTATGATGAAAGCCTCCGGCAACGATGAGAAAAGCGGCATTGCCTCCGACGACGGCGATAGCTGCGGGGACGATTTTTGGGGCGAGATTGAATTGCCGGAGCTTATGGATGGCGAGTGCTGCTGGGGTTGTCCGGCCGGCGCTTCATCCTGGACTTCCTCCGGCGACCTCGCCGAGTGGCCGGAGGAGGAGCTTTCGCCGCAGCAACCGTTGTTTATGGCATGTCTATAA 558 0.6434 MDHQPPPYPAAASAATDNPRGGTRHPVYRGVRKRRWGKWVSEIREPRKKNRIWLGSFPVPEMAARAYDVAAYCLKGRKAHLNFPDEVDSLPLPSSRSARDIQAAAAQAARMMKASGNDEKSGIASDDGDSCGDDFWGEIELPELMDGECCWGCPAGASSWTSSGDLAEWPEEELSPQQPLFMACL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2159 185 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Gso19g2159 185 CDD AP2 28 85 IPR001471 GO:0003700|GO:0006355
Gso19g2159 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF023 9 175 - -
Gso19g2159 185 Gene3D AP2/ERF domain 27 85 IPR036955 GO:0003700|GO:0006355
Gso19g2159 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 175 - -
Gso19g2159 185 MobiDBLite consensus disorder prediction 1 27 - -
Gso19g2159 185 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Gso19g2159 185 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Gso19g2159 185 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Gso19g2159 185 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
Gso19g2159 185 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2159 Gso-Chr19 50073864 50074561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2159 9 185 AP2-EREBP Transcription Factor Family AT1G01250 53.927 1.17e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso19g2159 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2159 K09286 - gmx:100802036 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2159 19 50073864 50074561 Gso3g2201 3 47185077 47185831 GST
Gso19g2159 19 50073864 50074561 Gso7g0489 7 4894295 4895147 PCT
Gso19g2159 19 50073864 50074561 Gso16g0195 16 2270653 2271526 PCT
Gso7g0489 7 4894295 4895147 Gso19g2159 19 50073864 50074561 PCT
Gso16g0195 16 2270653 2271526 Gso19g2159 19 50073864 50074561 PCT