Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2158 ATGAAGCTTGACGCGGGCGTGGTGTGGGACGATGAGGACAAGGCCATGCTTGGGGCTGTTCTGGGTGGTCGAGCTTTGGAGTTTCTAATGGCAAACTGGTTGTCGAATGAGAGTGTTTTAATGGCGGTTGGGAGTGAGGAGGGGCTGCAGAACAAGCTCTCGGATCTGGTGGAGCGTCCCAATGTCTCCAATTTCAGTTGGAACTACTCCATTTTCTGGCAGCTCTCGCATTCCAAATCCGGTGACTGGGTTCTGGGTTGGGGAGACGGGTGCTGCAGGGAACCCAGCGAGGAAGAAGAGGGTTCTTTGGGAAGAGGAACACTGAGGCTTCTTCGCGTGGACGAGGAGATGCAGCAGAGGATGCGGAAGAGGGTGCTGCAGAAGCTGCACACCACGTTCGGGGGCGAGGATGAGGACAATTACGCTTTTGGCCTCGACCACGTCACCGACACCGAGATGTTCTTTCTTGCTTCCATGTACTTTTCTTTCCCTCGCGGCCATGGTGGCCCAGGTAAGTGCTTCGCGTCCGGGAAGCATTTGTGGCTCAAATCTGTGTCTGATTACTGCGTGCGTTCTTCCTTGGCTAGCTCTGCGGGAATTCAGACTATTGTTTTGGTCCCTACTGATATGGGAGTGGTGGAGTTGGGTTCTGTCAGAATGTTACCCGAGAGTTTTGAACTCTTGCAGGCTGTTAAATCTGTGTTCTCCACGCAGTCTCCTTCATACCAAGGGGTGAGTGTGAGCACCGGTGGGAATGCTGTTTTCCCTGGTTTGGCAATTGGGGATGCTAATAAGGTAGATGGAGGAGTTTCGATTCCCAAGGTTTTTGTCAACACAATTGGAAATCGGACGCATTTCAGAGAGAAACTTGCAGTTAGAAAAATGGAGGATAATAGGCCTTGGCCAGGCCATGGCCACCCCGACCCCAATGGGAACAATCTCCACAACAACGTTAGTTTTCCGAATGTGCGGGGTAATAGTCTTCATGTTTCGAGTTGGGCAGTGAATTCGGATCTGAGGCAGCCTGGTCCCCTTGAGATTTTTGCTCCTAGGGCCCCCACGAGTAGTGTCCTCGCAGAGCTGGCTAATGTTGGGAAACAGGATTTCAGACCTCAAAGGCAGGTGCAAATGCAAATTGACTTTACCGGAGCCACTTCCAGGCCTTCTTCAGCGAGACCGGTCGTCGGTGAATTGGAGCTTTCTGATGTTGAGGCCTCTTGCAGGGAGGAGCAACAACCCAGTTTTGCCGATGAAAGGAAGCCCAGGAAGCGGGGAAGGAAGCCTGCCAATGGAAGGGAAGCGCCCCTCAATCATGTGGAGGCGGAGAGGCAAAGACGCGAGAAGCTCAACCAACGCTTCTATGCGTTGAGATCTGTGGTGCCTAACATCTCCAAGATGGATAAGGCTTCATTGCTGGGAGATGCCATTGCTTATATCAACGAGCTTCAGGCTAAAGTCAGGATCATGGAAGCTGAAAAAGAGAGATTTGGAAGCACTTCAAATGATGGATCAGTCTTGGAAGCTAAGTTGAGATTGGAAAATCAGGAGAAAAAAGCTCCTGATGTGGATATTCAAGCTTTTCAAGATGAGGTCATTGTAAAGGTGAGCTGCCCTCTTGACAGTCACCCTGTTTCAAAAGTAATCCAAACATTTAACGAAGCACAGATCAGTGTTGTAGAGTCTAAACTTGCTGCTGCAAATGATACCATTTTTCACACATTTGTAATTAAGTCCCAAGGACCTGAACAGCTCACAAAGGACAAGTTGATTGCTGTTTTTTCTCCAACAGAATCCAACTCATTGCAGCCATTGTCACAGTTGGATAGCAAGGGAATTGCAGTCAGCATAGTCCATACGTAG 1860 0.4984 MKLDAGVVWDDEDKAMLGAVLGGRALEFLMANWLSNESVLMAVGSEEGLQNKLSDLVERPNVSNFSWNYSIFWQLSHSKSGDWVLGWGDGCCREPSEEEEGSLGRGTLRLLRVDEEMQQRMRKRVLQKLHTTFGGEDEDNYAFGLDHVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHLWLKSVSDYCVRSSLASSAGIQTIVLVPTDMGVVELGSVRMLPESFELLQAVKSVFSTQSPSYQGVSVSTGGNAVFPGLAIGDANKVDGGVSIPKVFVNTIGNRTHFREKLAVRKMEDNRPWPGHGHPDPNGNNLHNNVSFPNVRGNSLHVSSWAVNSDLRQPGPLEIFAPRAPTSSVLAELANVGKQDFRPQRQVQMQIDFTGATSRPSSARPVVGELELSDVEASCREEQQPSFADERKPRKRGRKPANGREAPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKVRIMEAEKERFGSTSNDGSVLEAKLRLENQEKKAPDVDIQAFQDEVIVKVSCPLDSHPVSKVIQTFNEAQISVVESKLAAANDTIFHTFVIKSQGPEQLTKDKLIAVFSPTESNSLQPLSQLDSKGIAVSIVHT* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2158 619 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 49 235 IPR025610 -
Gso19g2158 619 Gene3D - 426 498 IPR036638 GO:0046983
Gso19g2158 619 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 5 595 - -
Gso19g2158 619 MobiDBLite consensus disorder prediction 403 444 - -
Gso19g2158 619 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 431 496 IPR036638 GO:0046983
Gso19g2158 619 SMART finulus 439 488 IPR011598 GO:0046983
Gso19g2158 619 CDD bHLH_AtAIB_like 430 502 - -
Gso19g2158 619 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 433 482 IPR011598 GO:0046983
Gso19g2158 619 PANTHER MYC 5 595 IPR045084 GO:0003700|GO:0006355
Gso19g2158 619 Coils Coil 479 499 - -
Gso19g2158 619 Pfam Helix-loop-helix DNA-binding domain 437 483 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2158 Gso-Chr19 50058209 50060734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2158 7 602 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.480 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso19g2158 bHLH-MYC_N 3.5e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2158 - - gmx:100801502 1213.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2158 19 50058209 50060734 Gso3g2200 3 47172677 47175008 GST
Gso19g2158 19 50058209 50060734 Gso7g0490 7 4921053 4923972 PCT
Gso19g2158 19 50058209 50060734 Gso16g0196 16 2291004 2293761 PCT
Gso7g0490 7 4921053 4923972 Gso19g2158 19 50058209 50060734 PCT
Gso16g0196 16 2291004 2293761 Gso19g2158 19 50058209 50060734 PCT