Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2156 ATGATATGTTCTTGTTCTCGAATAAAAGGTGTTTCACCCCTCAGTGTTTGGTTTCTGTGCAACGTGACATTGGGGTTTTTCATTTTATTTTATTTTGCAATGGAAACGGAAACCCGACGGAAAGTGGAGGAGATGGTGTTGGATATATTGAAGAAATCCAACATTGAAGAAGCCACTGAGTTCACCATCCGAGTCGCTGCCTCGGAGCGTCTCGGCATCGACCTCTCCGACTCTCCCAGTAGGCACTTCGTCAGAACCGTCGTTGAGTCTTATCTTCTCTCCGTTGCGGCCAATGAAATCTCCAAAGACGCAGAGAAGAAGGAGAACGAAGATATTGCCGCCAAAAACGACGACGATGTGAAGAAGGGAGATGTCGTTGCGGTGCCCAAACTGAAGAGGGATGATCCCGAACGCGTTATTTGTCAACTGTCCAGCAGGAGGAACTTGGCGGTGAAACATTTCAAAGGGACAACCCTAGTCTCAATTAGGGAATTCTATATGAAAGACGGAAAACTACTTCCTGGTTCTAAAGGGATAAGTTTATCTTCTGAACAATGGTCGACCTTCAAGAAGAGTGTTCCTGCCATAGAGGAAGCTATAAAAAAGATGGAAGGAAGGATAAGATTGGAGCCTAATGGTAAGCAAAATGGAGATGCGTCAAATTCAGCTGTTGATGTTGCTCTTGAGCCCAATGGTAAGCAAAATGGAGATGCGTCAAATTCAGTTGTTGATGTTGCTCCACTTGAGCCTCATGGTAAGCAAAATGGAGATGCATCAAATTCTGTTGTTGATGTTGCTGCTCTTGAGCCTGTTGTCCCTATTGAGGTCATCCGATTGGATGGGAAGAATTTCCAATCCTGGGCTCGGCAGATGGAATTACTCTTGAAACAATTAAAGGTTGACTATGTGCTAGATGAACCATGCCCGAACCCTACACTAGGGGAAAGTGCCAAGGCTGAAGACATTGCCACAGCCAAGGCTGCAGAAAGGAGATGGCTGAACGATGATTTGACATGTCATCGGAATATCTTGAGCCATTTATCTGATCCTTTGTATAACCTGTATGCGAACAGAAAATTGAGTGCTAAGGATTTATGGGAAGAATTAAAACTGGTTTATCTGTACGAGGAATTTGGAACCAAAAGATATCATGTGAAAAAGTATCTTGAATTTCAGATGGTTGAGGAGAAAGCAGTTATTGAACAAATCAGAGAATTAAATGGCATGGCAGATTCTATTGCTGCTGCTGGGATGTTTATCGATGACAACTTTCATGTTAGTGCCATCATTTCAAAGCTTCCACCATCGTGGAAGGACTTTTGCATCAAGTTAATGCGTGAGGAATATCTACCTTACCGGAAGTTAATGGAACGCATACAGATAGAGGAAGAATACCGCTATGGAGTAAAACGAGTGGTTGAACATTCTAACAGTATGGAAGGATATCACCAGGCCTATAATGGTGGACATAGGAGGGCTGACTATAAGCCATTGGGAATGTGTAGGAATAGGTCAGAAATTAATGCCAGGAGCGTACCCTGTAGTGTATGTGGCAAGAGGGGACATCTTTCTAAACATTGCTGGAGAAGAAATGACAAACAAACTAATGAGAGGAAATCAGAAGAGGATGAGCGTATACCCACATAA 1647 0.4317 MICSCSRIKGVSPLSVWFLCNVTLGFFILFYFAMETETRRKVEEMVLDILKKSNIEEATEFTIRVAASERLGIDLSDSPSRHFVRTVVESYLLSVAANEISKDAEKKENEDIAAKNDDDVKKGDVVAVPKLKRDDPERVICQLSSRRNLAVKHFKGTTLVSIREFYMKDGKLLPGSKGISLSSEQWSTFKKSVPAIEEAIKKMEGRIRLEPNGKQNGDASNSAVDVALEPNGKQNGDASNSVVDVAPLEPHGKQNGDASNSVVDVAALEPVVPIEVIRLDGKNFQSWARQMELLLKQLKVDYVLDEPCPNPTLGESAKAEDIATAKAAERRWLNDDLTCHRNILSHLSDPLYNLYANRKLSAKDLWEELKLVYLYEEFGTKRYHVKKYLEFQMVEEKAVIEQIRELNGMADSIAAAGMFIDDNFHVSAIISKLPPSWKDFCIKLMREEYLPYRKLMERIQIEEEYRYGVKRVVEHSNSMEGYHQAYNGGHRRADYKPLGMCRNRSEINARSVPCSVCGKRGHLSKHCWRRNDKQTNERKSEEDERIPT* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2156 548 ProSiteProfiles Zinc finger CCHC-type profile. 514 527 IPR001878 GO:0003676|GO:0008270
Gso19g2156 548 PANTHER PBF68 PROTEIN 34 547 - -
Gso19g2156 548 Pfam Transcriptional Coactivator p15 (PC4) 141 191 IPR003173 GO:0003677|GO:0006355
Gso19g2156 548 Pfam DEK C terminal domain 38 92 IPR014876 -
Gso19g2156 548 Gene3D Transcriptional Coactivator Pc4; Chain A 131 208 IPR009044 GO:0003677|GO:0006355
Gso19g2156 548 SUPERFAMILY ssDNA-binding transcriptional regulator domain 140 202 IPR009044 GO:0003677|GO:0006355
Gso19g2156 548 Pfam gag-polypeptide of LTR copia-type 332 465 - -
Gso19g2156 548 PANTHER PBF68 PROTEIN 34 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2156 Gso-Chr19 50039616 50044189 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Gso19g2156 Retrotran_gag_2 5e-15 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2156 - - gmx:100800963 1086.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2156 19 50039616 50044189 Gso3g2199 3 47161680 47166761 GST