Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2149 ATGGACATCTTGAAGGTCCTCTTCCACTTCTTCATATTTTTTCATGTCACATATGCATCAGATGACTGCAAATATTATTCTTGGTGCAGTGACAATAACATCCTTATTCGTTTCCCCTTTCAAATAGAAGGTCACCAACATCCTTATTGCGGCGGCTATCCTGGTTTCAAATTAACTTGCACCAATGATAGCAAAACAGTTATTAAACTTCCATACACGGGAAAGTTCATTGTCCGCAACATCAACTACCTCAGACAACAGATACAAGTCTATGACCCTGATAATTGCCTTCCAAAACGTCTTCTAAGCCTCAATCTTTCAGGCTCTCCCTTTGTTGCTGCTTCACTCCGCAACTACACCTTCTTAAGATGCCCAACTCGGAACGCAGGGTCACAATTCATTCCCATTGACTGTCTTAGCAATTCTACATCTTTCGTATCAGCTATTCTTTCAGTGAACTTGCCCAATCCATTGCCCGAGTCTTGCCATGTTATTAAGAAGCTCACATTTCCAGTTTCAAGGCCGGGACCATATGAGGAGATTTTCAGAGATGACCTTAGTGGAGATCTTCGATTAACATGGCATGCACCTGACTGTAGATATTGTGAATCACAAGAGGCCTTGTGCGGATTTGAGAGCATAAACAGTGATCAAGTTCGTTGTTTCTTTGATTACCAAACAGCTCCTCCACAACATGGTCTTCGAGTATTTGGAATCATCACATCATCTATTGTGGGACCAGCTATCATCTTTGTCATTGCAATTGCATGCTACGCGTCCTTAAAGTACAGAAGAGGCAATACAGCCAGAATTGCTGCTGCACAGAGGTCGGAACCAAGTGCAATATCACCCCAACCTTCCATTGCTACGATGGGCTTGGATGATTCTACAATCGAGTCTTATCAGAAACTTGTACTAGGGGAAAGCCGACGAGTGCCTGGACCCAATGACGGATGTTGCACCATATGCTTGTCAGAGTATAAAACCAAAGACACAATCAGATGCATTCCTGAGTGTGCACATTGTTTCCATGCCGAATGCATAGATGAATGGCTTCGCATGAATAGCACATGCCCCGTTTGCCGCAACTCCCCCTCCCATCCTTCTACTGCTCAAGTTATGGCCAGTGATCCTTGA 1137 0.438 MDILKVLFHFFIFFHVTYASDDCKYYSWCSDNNILIRFPFQIEGHQHPYCGGYPGFKLTCTNDSKTVIKLPYTGKFIVRNINYLRQQIQVYDPDNCLPKRLLSLNLSGSPFVAASLRNYTFLRCPTRNAGSQFIPIDCLSNSTSFVSAILSVNLPNPLPESCHVIKKLTFPVSRPGPYEEIFRDDLSGDLRLTWHAPDCRYCESQEALCGFESINSDQVRCFFDYQTAPPQHGLRVFGIITSSIVGPAIIFVIAIACYASLKYRRGNTARIAAAQRSEPSAISPQPSIATMGLDDSTIESYQKLVLGESRRVPGPNDGCCTICLSEYKTKDTIRCIPECAHCFHAECIDEWLRMNSTCPVCRNSPSHPSTAQVMASDP* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2149 378 SUPERFAMILY RING/U-box 313 365 - -
Gso19g2149 378 Pfam Ring finger domain 320 362 IPR001841 -
Gso19g2149 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 366 IPR013083 -
Gso19g2149 378 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 1 370 - -
Gso19g2149 378 ProSiteProfiles Zinc finger RING-type profile. 320 362 IPR001841 -
Gso19g2149 378 CDD RING-H2_PA-TM-RING 319 362 - -
Gso19g2149 378 SMART ring_2 320 361 IPR001841 -
Gso19g2149 378 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 370 - -
Gso19g2149 378 Pfam Wall-associated receptor kinase galacturonan-binding 23 92 IPR025287 GO:0030247
Gso19g2149 378 Pfam Wall-associated receptor kinase C-terminal 161 223 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2149 Gso-Chr19 49993198 49995522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2149 19 366 C3H Transcription Factor Family AT2G25410 44.134 2.96e-92 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2149 - - gmx:100799895 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2149 19 49993198 49995522 Gso7g0498 7 5017959 5020956 PCT
Gso19g2149 19 49993198 49995522 Gso16g0206 16 2398568 2401269 PCT
Gso7g0498 7 5017959 5020956 Gso19g2149 19 49993198 49995522 PCT
Gso16g0206 16 2398568 2401269 Gso19g2149 19 49993198 49995522 PCT