Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2148 ATGGAGCAGAAGAGGAGCAGCAAGATGTACAACCTGTTCGTGAAGCACTTGGACGGGAAAACCCTAACCCTCCTATTCCCCTCTCCGATCCTCTACGCGAGTTCCATCAAGGATCGCCTCTTCCAACTCACTGGAATCCCCGCCCACCACCAGCGCCTCGTCACCGGCTGTCGCCACCTCAACGATGACAAATCCGCTATCCAGTGCTCCCCGGGGGACGGCAACATGTTTCCCTCCGTGCGCCTCCTCCTGCGCCTCAAGGGCGGCAAGGGAGGCTTTGGCTCGCTTCTCCGTGGCGCCGCCACCAAGGCCGGCCAGAAGAAGACCAACAATTTCGACGCGTGCCGCGACATGAGTGGCCGGAGGCTGAGGCACGTCAACGCCGAGAAGAGGTTGGAGGAATGGAAGGCCGGAGAAGAGGAGAGGAAGCTCGAGAAGGTGGCCGAGGAGTTTCTCAAGAAGCAGATGAAGAAGGGCAAGGGAAAGGGTAAGGGTGAAGGTGACGGTGAGGCCCACAAGTATGTCGCAAAATATAGGGAGGAATCTGAACGTTGTGTTGCCGAGGTTGCCTTGTCTGTTAAAGAGGCTCTCACTGCCAAGCGCAAGAGCCCTTCACAACCCCACCATGATGCTAAGAAGTTGAAAATATGGATGGGGAAGAGGAAATTGAATGAAAGTGATAGTGATTATAGTGATGATTCTGATGAAGAGGGGGAGATGGAGAAATCGGAATTGTTGAATGGCCCGAATGAGTTGGGCTCAAATAAGGCTGAGGGCAGTTTGGGTTCGGTAAATGGGGGCGGAGGCTCTTCTGGTGCTGGCTCGTGTGAAAGTGGGTCTGAAGAAGAGAAGGAAACTGCTGTGGATGGAAATGTGGTATCTGTTGGGATGCTGAGTGGTGAAATTATTCACGCCACAGCTGAACCTGTGATAATCAATGAGGCTACTGAAATGCCAAAGGGGTCGGTGGTTGCTGAAGATAATCAGGATTGTCATGGAGGTGTGTCTGACAAGTTTGATGGTACTGTGAATCAGGCCTTGAATGTTATGGGCTCTGAAACCGTGGCTAGTGCTGGTGAATCTAATGATATGGAAATTGATGGATCTCTTGAGCATAAAGCAACTGTCAATGAAGGAAGTTCACCAAGCACTAGTGTTCCTGTGTTGGAGGAGCCCCTGAATTTTGATGCCTTTAATTCAGCTGCCGAACTTGAGGTTCTTGGCTTGGAAAGGTTGAAGTCTGAACTGCAGTCACGTGGGTTAAAATGTGGAGGTACTTTGATGGAGCGTGCTGCCAGGCTTTTTCTCTTAAAATCAACTCCCCTGGATGAACTTCCAAAGAAGCTGATTGCGAAGAAGTAA 1362 0.5125 MEQKRSSKMYNLFVKHLDGKTLTLLFPSPILYASSIKDRLFQLTGIPAHHQRLVTGCRHLNDDKSAIQCSPGDGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEEERKLEKVAEEFLKKQMKKGKGKGKGEGDGEAHKYVAKYREESERCVAEVALSVKEALTAKRKSPSQPHHDAKKLKIWMGKRKLNESDSDYSDDSDEEGEMEKSELLNGPNELGSNKAEGSLGSVNGGGGSSGAGSCESGSEEEKETAVDGNVVSVGMLSGEIIHATAEPVIINEATEMPKGSVVAEDNQDCHGGVSDKFDGTVNQALNVMGSETVASAGESNDMEIDGSLEHKATVNEGSSPSTSVPVLEEPLNFDAFNSAAELEVLGLERLKSELQSRGLKCGGTLMERAARLFLLKSTPLDELPKKLIAKK* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2148 453 Pfam Replication stress response SDE2 C-terminal 386 452 - -
Gso19g2148 453 Coils Coil 399 419 - -
Gso19g2148 453 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 9 452 - -
Gso19g2148 453 ProSiteProfiles Ubiquitin domain profile. 10 75 IPR000626 GO:0005515
Gso19g2148 453 MobiDBLite consensus disorder prediction 198 288 - -
Gso19g2148 453 PANTHER SPLICING FACTOR SF3A-RELATED 9 452 - -
Gso19g2148 453 Pfam Silencing defective 2 N-terminal ubiquitin domain 10 155 IPR024974 -
Gso19g2148 453 Gene3D - 2 91 - -
Gso19g2148 453 MobiDBLite consensus disorder prediction 248 277 - -
Gso19g2148 453 MobiDBLite consensus disorder prediction 201 228 - -
Gso19g2148 453 SUPERFAMILY Ubiquitin-like 6 76 IPR029071 -
Gso19g2148 453 ProSitePatterns EF-hand calcium-binding domain. 233 245 IPR018247 -
Gso19g2148 453 CDD Ubl_ubiquitin_like 12 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2148 Gso-Chr19 49989663 49993278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2148 386 452 C2H2 Transcription Factor Family AT5G06160 43.284 8.50e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2148 K25059 - gmx:100799364 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2148 19 49989663 49993278 Gso3g2193 3 47109077 47112529 GST