Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2146 ATGAATGCAAAGGGACATAAATTTGTGAGGTTTGAGGACTGGAAATCAGAGTCATCTTTTAGTCCAGAGCAAGAAGATTCTATTGACAGTGGGAATCACAAAAGAAGACCAAGTGTGGGTACTGTTTTAAAGAGTATAGGAAGAAGGCTTGAGAGTGGGTCGGAGAAGATGAAGAACTTGAGAAGAGCTTCAGCTGTCCATCCTGTAAGTGATGGACAGAAAAAGCTGCCACCTAGGAAGAAAATTCTTGATCCACAGGGTCCGGTCCTTCAGAAATGGAACAAAATCTTTGTAATAACGTGTGTGCTGGCTGTCTCTGTGGACCCGCTCTTCTCTTACATTCCGGTGATAAATAATGAGGAAAAATGTGTTCATTTGGATGGAGCATTGCAGATCACTGCCAGTGTTCTTCGCACCTTCTTTGATCTATTCTACATTCTTCGCATAATCTTTCAGTTTAAGACAGCATTCATTCCCCCTTCTTCTCGTGTTTTTGGAAGGGGTGAGCTCATTGATGATCCTGTGGCTATAATGAAAAGATACTTAACTTCACACTTCATCATTGATATTCTATCAATTATTCCACTTCCACAGGTGATTGTTTTAGCCATAAATCGAAATTCGAAAACATCAGATCCATTTGTAGCAAAGGATTTGTTGAAGTATTCAGTATTAATCCAGTATGTGCCAAGGCTTTTGCGGATGTATCCACTATTCAAAGAAGTAACTAGAACTTCTGGCATATTGACCGAGACAGCATGGGCTGGAGCTGCTTTTAATCTTTTTCTCTATATGCTAGCAAGTCATGTGGTTGGAGCTAACTGGTATATGCTTTCGGTAGAGTCAGAGTTGCGGTGTTGGCGCAGAGAGTTAAGGAATGCTTCACTCTATCATCGAAAATACATGAGTTGTGTAGACCGCAATCCAAATGTCTTTACACTTCTCAATCGAACTTGTTCTTTGGTTGACCCTGACACAATCAAAGACCCAAACACCTTCAATTATGGAATATTTTTTGATGCTCTAGATTCACGTGTTGTAGAATCAACAACAGATTTTCCTCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTCTTGGACAAAATCTAAAGACTAGTACTGATGTCTCAGAAATAGCTTTTGCAATCTTCATTGCCATCTTTGGATTGGTCTTATTCTCATTACTTATTGGAAACATGCAGAAATATCTGCAATCTACAACTGTAAGAGTGGAGGAGATGAGAGTGAAGAGACAGGACGCAGAACAGTGGATGTCCCACCGTATGCTACCTGAGAACTTGAGGGAAAGAATTAGAAAGTACGAACAGTACCAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGGCATTAATTCGTAACCTTCCTAAAGATCTCAGAAGGGACATTAAGCGTCACCTTTGCTTAACTTTAGTTAAAAAAGTGCCAATGTTTGAGAAAATGGATGAGCAGTTGTTGGATGCAATGTGTGATAGACTGAAGCCAGTCCTTTATACTGAGAAGAGCTACATTGTTCGTGAAGAAGATCCAGTTGATGAGATGCTTTTCATTATGCGCGGAAAAGTTTCGACCATGACAACGAATGGTGGAAGAACTGGTTTCTTCAACTCCATGTTCCTCAAGGCTGGTGACTTTTGTGGAGAGGAACTTCTGACATGGGCTTTGGATCCCAACTCCTCCTCAAATCTACCCATTTCAACCAGGACAGTACAAACTATGTCAGAAGTTGAAGCCTTTGCTCTCATGGCTGATGACTTGAAGTTTGTTGTTTCCCAATTTCGACACCTTCACAGCAAACAGCTCCAACAGGTTTTCAGGTTCTATTCTTCACAGTGGAGGAGATGGGCTGCTACTTTCATACAAGCAGCTTGGCGTCGATACTGGAAAAAGAAGATTGAGAGGTCATTGCGCGAAGCAGAAGATGAGCTACAAGATGCTTTTGCAAATGAGGAAGGGTCTAGTCTAAGCCTTGGTGCAACCATATATGCATCAAGGTAA 2031 0.4126 MNAKGHKFVRFEDWKSESSFSPEQEDSIDSGNHKRRPSVGTVLKSIGRRLESGSEKMKNLRRASAVHPVSDGQKKLPPRKKILDPQGPVLQKWNKIFVITCVLAVSVDPLFSYIPVINNEEKCVHLDGALQITASVLRTFFDLFYILRIIFQFKTAFIPPSSRVFGRGELIDDPVAIMKRYLTSHFIIDILSIIPLPQVIVLAINRNSKTSDPFVAKDLLKYSVLIQYVPRLLRMYPLFKEVTRTSGILTETAWAGAAFNLFLYMLASHVVGANWYMLSVESELRCWRRELRNASLYHRKYMSCVDRNPNVFTLLNRTCSLVDPDTIKDPNTFNYGIFFDALDSRVVESTTDFPQKFFYCFWWGLRNLSSLGQNLKTSTDVSEIAFAIFIAIFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRQDAEQWMSHRMLPENLRERIRKYEQYQWQENRGVEEEALIRNLPKDLRRDIKRHLCLTLVKKVPMFEKMDEQLLDAMCDRLKPVLYTEKSYIVREEDPVDEMLFIMRGKVSTMTTNGGRTGFFNSMFLKAGDFCGEELLTWALDPNSSSNLPISTRTVQTMSEVEAFALMADDLKFVVSQFRHLHSKQLQQVFRFYSSQWRRWAATFIQAAWRRYWKKKIERSLREAEDELQDAFANEEGSSLSLGATIYASR* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2146 676 Coils Coil 640 660 - -
Gso19g2146 676 MobiDBLite consensus disorder prediction 15 33 - -
Gso19g2146 676 CDD CAP_ED 488 619 IPR000595 -
Gso19g2146 676 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 676 - -
Gso19g2146 676 Gene3D - 95 412 - -
Gso19g2146 676 Pfam Cyclic nucleotide-binding domain 508 602 IPR000595 -
Gso19g2146 676 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 676 - -
Gso19g2146 676 SUPERFAMILY cAMP-binding domain-like 417 614 IPR018490 -
Gso19g2146 676 ProSiteProfiles IQ motif profile. 624 653 IPR000048 GO:0005515
Gso19g2146 676 MobiDBLite consensus disorder prediction 15 81 - -
Gso19g2146 676 ProSiteProfiles cAMP/cGMP binding motif profile. 488 572 IPR000595 -
Gso19g2146 676 SUPERFAMILY Voltage-gated potassium channels 84 410 - -
Gso19g2146 676 SMART cnmp_10 488 619 IPR000595 -
Gso19g2146 676 Pfam Ion transport protein 93 416 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso19g2146 676 Gene3D Helix hairpin bin 415 479 - -
Gso19g2146 676 Gene3D Jelly Rolls 486 606 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2146 Gso-Chr19 49974531 49987252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2146 1 676 Ion Channels AT5G53130 64.076 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2146 K05391 - gmx:100797784 1329.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2146 19 49974531 49987252 Gso3g2191 3 47094677 47099201 GST
Gso19g2146 19 49974531 49987252 Gso16g0208 16 2431019 2438639 PCT
Gso16g0208 16 2431019 2438639 Gso19g2146 19 49974531 49987252 PCT