Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2141 ATGGAAGAGAGCACCAAGAGGAAACACACTAGTCTGATCCATGAACTAATCCAAGGAAAGGAACTAACAAAGCAGCTTAGTAACCACCTGGTTTCATCTTCTCCAATGTCCCATCAAACCAATGAATTGTTTGTTGAGAAAATACTTTTGTCTTATGAGAAAGCACTCACCATGCTGAACTGGGGCTCTATTATGGGAGAGGCCAAGACCACCAGTGGCAACATCATGGATTCCCATTGTTCTTTTACAAATGGTGGGAGCCCCAGAAGTGAGGTCGTGGACCGTGAATTGGAGCACAAAGCTGCCCTCAAGAAAAGAAAGACCATGCCCAGATGGACCGAGCAAGTGAAGATTTGCTCAAGAAGAGGACTTGAAGGGTCATTGGATGATGGATATAGCTGGAGAAAATATGGCCAAAAGGATATTCTCAGAGCTAAGTTTCCAAGAGGATATTACAGATGCACACATAGAAATGTACAAGGGTGTCTAGCAACAAAACAAGTTCAAAGGTCAGATGAAGACCCAACAACAATTGAGGTGACCTACAGAGGAAGACATACATGCACGCAAGCTAAGCATTTAAACAAGGCATTCCCATCAAACATCAAGGCATGTTTGGGAGAAAATCAATTTCAAAAGAATCAACCACTTCTAGAGAAAATACAACAACAAACCCCTGAGGTGATTTTCACCTTTGAAACAGAGCTTAAAGTCAAAACAGAGGAATTGGAAACCAAGGAGGATATCTTCCCATGGTTTTCCTTTCCTTCTCCATCAATTGGATCAGAAAACGAGGACAACATGTTACCCGAGACTATGTTTGAAAACCATTTCATGGAAAGCTTCTCTCCAGTATTCTTATCACCAGCGACTTCAGAATCAAACCCTTTCTGTTTGTCAGCGTACCACTTGGACAGCACTGGACTATTATGCCAAAACATACAAACCTCAGAATCTGATATCACTGAGATAGTTTCAGCCCCAACTTCAGTCACCAAGTCCCCAATCCTGGATTTGGATATCTTGCTTGATAAAGGGGATTTTGACACGGATTTCCCTTTCAACATTCCTGAATTTTTCTCTTCATAA 1089 0.4178 MEESTKRKHTSLIHELIQGKELTKQLSNHLVSSSPMSHQTNELFVEKILLSYEKALTMLNWGSIMGEAKTTSGNIMDSHCSFTNGGSPRSEVVDRELEHKAALKKRKTMPRWTEQVKICSRRGLEGSLDDGYSWRKYGQKDILRAKFPRGYYRCTHRNVQGCLATKQVQRSDEDPTTIEVTYRGRHTCTQAKHLNKAFPSNIKACLGENQFQKNQPLLEKIQQQTPEVIFTFETELKVKTEELETKEDIFPWFSFPSPSIGSENEDNMLPETMFENHFMESFSPVFLSPATSESNPFCLSAYHLDSTGLLCQNIQTSESDITEIVSAPTSVTKSPILDLDILLDKGDFDTDFPFNIPEFFSS* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2141 362 SMART WRKY_cls 128 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso19g2141 362 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 355 - -
Gso19g2141 362 SUPERFAMILY WRKY DNA-binding domain 127 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso19g2141 362 Pfam WRKY DNA -binding domain 129 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso19g2141 362 ProSiteProfiles WRKY domain profile. 123 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso19g2141 362 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 355 IPR044810 GO:0003700
Gso19g2141 362 Gene3D WRKY domain 115 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2141 Gso-Chr19 49934076 49936828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2141 11 256 WRKY Transcription Factor Family AT4G23810 38.182 3.71e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso19g2141 WRKY 2.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2141 - - gmx:100790050 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2141 19 49934076 49936828 Gso3g2188 3 47074111 47077041 GST
Gso19g2141 19 49934076 49936828 Gso7g0510 7 5150137 5153078 PCT
Gso19g2141 19 49934076 49936828 Gso16g0218 16 2548225 2551457 PCT
Gso7g0510 7 5150137 5153078 Gso19g2141 19 49934076 49936828 PCT
Gso16g0218 16 2548225 2551457 Gso19g2141 19 49934076 49936828 PCT