Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2130 ATGGAGGCTAGATTCAGTGAGCAGAAGGTCGTTGTCACTTACAAACATGTCAAACCTGGCATTTTAAATGCAGCAGCACCAAAGGTAGTTCGGATTTCTGTGATGGATCCCTATGCCACAGATGAGGAAGATGAAGATGAAGGGTTGGTTAATCATCCAAGAATGAAGAAGTTTGTGAATGAAATCAGAATTGTGGAGAAGAAGAGTTCAACTAACAGTGAGTCTGCAGGTGTAAATCGTACTAATGTGTCACTGAGACAGCATTGCAAGGGAAAAACTGGAGGGAGTCTCGAAGAAAAGAAGCTTAGAGGAATCCGTCAAAGGCCATGGGGAAGATGGGCAGCAGAAATCAGAGATCCTGTGAAGCGAAGAAGGGTGTGGTTAGGGACTTATGACACCGCGGAAGAAGCTGCTATGGTTTATGACAAAGCAGCTATTACCTTTAGAGGCTCTAATGCTCGCACTAATTTCATCAAGCCTCCTTCAAGGGATGTTGTTCTCACTAATGAAACTGAAGCTAGAGTGACTGTGAGTGGTGAGAATGATTCAAGTGAAGGGTCGTCTCATTTTCCTTCACCTACTTCTGTGCTTAAACTTCAACCTGTTGAAATTATGTTGGAGGAGTTTTCTGAAACAGATCTTCTAAGCAAAGAAGAGTCTAGTTCTCAAGACAGTTTCTTGTTTTTAGATTCACATTCGCCATCCATTGATTGTTATTTCAATTTTGAAACTCTTCCACCAGTGTTTCTTGGTGAAACTAGTGTAACACAGCAGCCTGTTTTCCATGGCAACTTCAGTGACATTTCCCATCTTGTCAATGAGGATTTTCAATCATGGAATTGGGATATAGATAGTTACTTCAGTGATCCTCTTTCGTTATGA 882 0.415 MEARFSEQKVVVTYKHVKPGILNAAAPKVVRISVMDPYATDEEDEDEGLVNHPRMKKFVNEIRIVEKKSSTNSESAGVNRTNVSLRQHCKGKTGGSLEEKKLRGIRQRPWGRWAAEIRDPVKRRRVWLGTYDTAEEAAMVYDKAAITFRGSNARTNFIKPPSRDVVLTNETEARVTVSGENDSSEGSSHFPSPTSVLKLQPVEIMLEEFSETDLLSKEESSSQDSFLFLDSHSPSIDCYFNFETLPPVFLGETSVTQQPVFHGNFSDISHLVNEDFQSWNWDIDSYFSDPLSL* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2130 293 SUPERFAMILY DNA-binding domain 101 157 IPR016177 GO:0003677
Gso19g2130 293 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Gso19g2130 293 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 4 289 - -
Gso19g2130 293 CDD AP2 100 157 IPR001471 GO:0003700|GO:0006355
Gso19g2130 293 PIRSF PTI6 247 290 IPR017392 GO:0003700
Gso19g2130 293 PIRSF PTI6 3 245 IPR017392 GO:0003700
Gso19g2130 293 Gene3D AP2/ERF domain 100 159 IPR036955 GO:0003700|GO:0006355
Gso19g2130 293 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Gso19g2130 293 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Gso19g2130 293 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Gso19g2130 293 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Gso19g2130 293 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2130 Gso-Chr19 49831504 49832385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2130 3 268 AP2-EREBP Transcription Factor Family AT4G27950 35.959 5.82e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso19g2130 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2130 - - gmx:102669451 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2130 19 49831504 49832385 Gso3g2176 3 46973743 46974630 GST