Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2113 ATGAAAATAAAAACCCATTTACCTCGGCACCTTTTGTTTGCATTTTTATTTCTCGCAGCACTCCCCGCGTATTCCCCACTTGTATCGCCTGCACCCAATGATCCTCCACAAGGTACATGTGTGCTGAAGTTCAATACGTCCCAATATGTGCCATTTGATGAGTGCGGTGATGTGAATGAGGAGATAGACAAGTGGGGTGACGATGGGTTCCCGACAACCTTGTGTTGTCGAAATGCTCTGACGGTTTTGTCGAATGCGTTGGCCTCGCAGGCCCTGAACTCAGGAGGACAAGTGTTCATTTCCCAAGATCAGTTGCAGAGTTGTGCCCAGTCATTTAACCCACAGCAAGGGGTATCGCTTAATTCATGCGGCTTTCAAAGCTTGTACCTAGGCAGTTCCAAATGCTCCAACCTCGTTTTACAGGATGTTAGGAAACTGCAACAGTACCAGGATGCATTGGACAAGTGTTCCCACTTCGACCACCCATTTGGTGAATCTTGTGCAGATTGCACCGGTGCAATATTGAGCTTGAGAGATGGTTTACATAATCAAGTGGCCAACAACAACAACAACCACACTGAGCTAGCCATATGTGAGGTAGCAGCTATTGTTGCTGTTGCAGCTGGGAAACCAAACGATCCTGTCGTTGACAAAGTCTTACGCTGCTTGCCACCTTCAGCTTCAGGATCAGACAAGAGATCTTTGTGGAAACCCTTGTTGAGTGTGCCGGTAGTTATCCTTGCAATATTGCTTGTGGTTATTATGGTAAAATGTTTGTCCAAGAAGAAGTTTCGTAGACAGGCAAACTTGAAGGAGATCGTGGCGTGGTCTGGATTGTACTGGTTCTGCAAAAGGGAAATTGAGAATGCCATGAATTATGGCGGTGAAAAGATATGCCTTGGACGTGGGAGTACAGGGCAGGTGTATAGAGGTGTTCTGCCAAGTGGTCAACTCGTGGCCATCAAGCATTTAACAAAGAGTAACACCTCCGAGTCTTTCACTCGAGAAGTTGAAGGCCTTTCAAGGCTTCGCCATCCTAACCTGGTTTGCCTCTTTGGAAGTTGCATAGAAGGGGATGAGAGATATTTAGTCTATGAATTTTGTGCAAACGGAAATCTTGCTCAACATCTCTTAAGAAGAGATAGCCACTTGACATGGGAAACAAGAGTAAGAATTTTGAGAGATTGTTCATACGCACTCAAGTACCTCCACCATCATATAGAAGGCTGTGTTGTCCATAGAGATATAAAGCTTACGAACATTCTTTTGAATGAGAAATACCAAGCCAAACTATCAGATTTTGGACTGGCAAAGGTGATGGGGATTACAGAGAGCAAGGTTTTTACTGATGTTAGAGGAACAATAGGCTACATGGATCCAGAGTACATGAGTAATGCCAAGCTAACCTGCGCTAGCGATGTATACAGTTTTGGTATTGTTGCTCTACAAATTCTGTCAGGACAGAAAGTCATAGAATTGGATCTTGATGCCAGAGATCAACTCACTAGGAAGGCAAGAGATGTGAGCATGGGAAAGCGTCCACTGTCGGATTTTGAAGACCCGCGACTAAATGGAAAAGTTGATAAGGCAGACTTCGAAGCCATCCTTCAGATTGCAGTGTTGTGTGTTGCCAAATCAAGCAAAGGTCGTCCAACCATTGAGCTTGTTTTTGAGGAATTGGACAAGGTCTGCGGGGACACAGAAACACGGATGAAGCAAAAGAAGGATGAGAGCTCATCAACAACATCCACCCCGAGCTCCAAATCGGCTCCTCTATGA 1779 0.4508 MKIKTHLPRHLLFAFLFLAALPAYSPLVSPAPNDPPQGTCVLKFNTSQYVPFDECGDVNEEIDKWGDDGFPTTLCCRNALTVLSNALASQALNSGGQVFISQDQLQSCAQSFNPQQGVSLNSCGFQSLYLGSSKCSNLVLQDVRKLQQYQDALDKCSHFDHPFGESCADCTGAILSLRDGLHNQVANNNNNHTELAICEVAAIVAVAAGKPNDPVVDKVLRCLPPSASGSDKRSLWKPLLSVPVVILAILLVVIMVKCLSKKKFRRQANLKEIVAWSGLYWFCKREIENAMNYGGEKICLGRGSTGQVYRGVLPSGQLVAIKHLTKSNTSESFTREVEGLSRLRHPNLVCLFGSCIEGDERYLVYEFCANGNLAQHLLRRDSHLTWETRVRILRDCSYALKYLHHHIEGCVVHRDIKLTNILLNEKYQAKLSDFGLAKVMGITESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPLSDFEDPRLNGKVDKADFEAILQIAVLCVAKSSKGRPTIELVFEELDKVCGDTETRMKQKKDESSSTTSTPSSKSAPL* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2113 592 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 40 50 574 - -
Gso19g2113 592 ProSiteProfiles Protein kinase domain profile. 294 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g2113 592 PANTHER OS01G0253100 PROTEIN 50 574 IPR045271 GO:0004714|GO:0006468
Gso19g2113 592 Gene3D Transferase(Phosphotransferase) domain 1 368 589 - -
Gso19g2113 592 Pfam SPARK 36 193 IPR043891 -
Gso19g2113 592 Gene3D Phosphorylase Kinase; domain 1 254 367 - -
Gso19g2113 592 SMART serkin_6 294 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g2113 592 SUPERFAMILY Protein kinase-like (PK-like) 276 559 IPR011009 -
Gso19g2113 592 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Gso19g2113 592 MobiDBLite consensus disorder prediction 567 592 - -
Gso19g2113 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Gso19g2113 592 Pfam Protein kinase domain 300 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g2113 592 MobiDBLite consensus disorder prediction 578 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2113 Gso-Chr19 49684620 49688289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2113 299 579 Receptor kinase-like Gene Family AT1G51800 42.466 3.93e-57 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Gso19g2113 Pkinase 3.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2113 - - gmx:100790391 1049.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2113 19 49684620 49688289 Gso3g2159 3 46846249 46849269 GST
Gso19g2113 19 49684620 49688289 Gso7g0578 7 6131451 6134789 PCT
Gso19g2113 19 49684620 49688289 Gso16g0266 16 3047437 3051577 PCT