Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2109 ATGGCCAAGAGGGAGCAGCGATTGAGAGGAGTGTCGGCATCGGAATTGAAGGAGAAGTTGCGGGAATTGGTGAAGTCCATCGTGGACTCCGACGACTACACGCTTGAAGCCGCCGACGAAGCCATAGCCACCCTTTCTTCTCTGAAACATTTAAAGTCCCCCATCCCCGACGACTTTCCTCTTCCTCCCCAATTTCGCTGCCCCATTTCAACCCAATTGATGTCCGATCCCGTTATCCTATCCACCGGCCAGACTTACGACAGGCCATTTATTCAGAGGTGGTTGAATGAGGGTCACAGAACATGTCCTCAGACACAACAGGTTCTTTCTCACACAATTCTAACTCCCAATTACTTGGTCCGAGACATGATTCTCCTGTGGTGTCGGGACCGTGGAATTGACCTACCTAACCCTGCTAAGGACCTCGATGAAGTTGTCACCAATGCCGATAGAAACCATTTGAATTCGTTGCTTCGTAAGTTGCAATTGTCTGTTCCTGATCAGAAAGAAGCTGCCAAGGAGCTTCGCCTTTTGACAAAGCGAATGCCTTCCATTCGAACCCTTGTTGGGGAGTCCAGTGATACCATTCCCCTGTTGCTGAGTCCGTTAGCTGCGGCCTCAACTGACCCTGATCTCCATGAGGACTTGATCACCACGGTTCTCAATCTCTCAATTCATGATGACAATAAGAAGTCGTTTGCGGAGGATCCTGCGCTGATTTCTCTGCTTATTGATGCCTTGAAATGTGGCACTATTCAAACAAGGAGTAATGCTGCGGCTGCTATTTTCACGTTGTCGGCTATTGATTCCAACAAGCACATCATTGGAGAATCTGGAGCCATTAAACACTTGCTTGAGCTTTTGGATGAGGGACAACCATTGGCCATGAAAGATGCTGCTTCAGCCATATTTAACCTGTGTCTTGTGCACGAGAATAAGGGGAGGACCGTTCGAGATGGGGCGGTTCGGGTTATTCTCAACAAGATGATGGACCACATACTAGTTGATGAGTTGTTGGCTATATTAGCACTTCTCTCCAGCCATCCCAAGGCTGTTGAAGAAATGGGTGATTTTGATGCCGTTCCTTTGTTATTGGGGGTTATTAGGGAGAGCACATCAGAGAGAAGCAAGGAAAATTGTGTTGCAATTCTGTATACAATCTGTTTTAGTGATAGAACAAAGTTGAAGGAAATTAGAGAAGAAGAAAAAGCCAATGGTACACTGACAAAGCTTGCAAAATGTGGAACTTCAAGGGCAAAAAGGAAGGCTAATGGTATTCTTGAGAGGCTTAATAGATCCCCCTCCTTAACTCACACTGCTTAG 1323 0.4664 MAKREQRLRGVSASELKEKLRELVKSIVDSDDYTLEAADEAIATLSSLKHLKSPIPDDFPLPPQFRCPISTQLMSDPVILSTGQTYDRPFIQRWLNEGHRTCPQTQQVLSHTILTPNYLVRDMILLWCRDRGIDLPNPAKDLDEVVTNADRNHLNSLLRKLQLSVPDQKEAAKELRLLTKRMPSIRTLVGESSDTIPLLLSPLAAASTDPDLHEDLITTVLNLSIHDDNKKSFAEDPALISLLIDALKCGTIQTRSNAAAAIFTLSAIDSNKHIIGESGAIKHLLELLDEGQPLAMKDAASAIFNLCLVHENKGRTVRDGAVRVILNKMMDHILVDELLAILALLSSHPKAVEEMGDFDAVPLLLGVIRESTSERSKENCVAILYTICFSDRTKLKEIREEEKANGTLTKLAKCGTSRAKRKANGILERLNRSPSLTHTA* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2109 440 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 10 438 - -
Gso19g2109 440 Pfam U-box domain 62 130 IPR003613 GO:0004842|GO:0016567
Gso19g2109 440 SUPERFAMILY ARM repeat 152 431 IPR016024 -
Gso19g2109 440 SUPERFAMILY RING/U-box 59 137 - -
Gso19g2109 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 134 IPR013083 -
Gso19g2109 440 Gene3D - 334 434 IPR011989 -
Gso19g2109 440 ProSiteProfiles U-box domain profile. 60 134 IPR003613 GO:0004842|GO:0016567
Gso19g2109 440 PANTHER U BOX DOMAIN-CONTAINING 10 438 - -
Gso19g2109 440 SMART arm_5 268 308 IPR000225 GO:0005515
Gso19g2109 440 SMART arm_5 348 389 IPR000225 GO:0005515
Gso19g2109 440 SMART arm_5 226 267 IPR000225 GO:0005515
Gso19g2109 440 CDD RING-Ubox_PUB 65 107 IPR045210 -
Gso19g2109 440 SMART Ubox_2 64 127 IPR003613 GO:0004842|GO:0016567
Gso19g2109 440 Gene3D - 190 333 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2109 Gso-Chr19 49655318 49657144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2109 123 440 U-box Gene Family AT3G07360 58.282 4.66e-121 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2109 - - gmx:100776534 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2109 19 49655318 49657144 Gso3g2154 3 46816678 46818503 GST