Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2099 ATGTTCAAGCTATCTCGCATGCTCCCTCTCACTTCCACTTCCAGGCATAGGCTGTTGGAAGTGCTGTCCTCTAGGAAAGTTGAAGTCGGAGACCGTCTTAGCCATTCAGCTGGCATTTCTACTGCTACAAATAACTATGCTGCCAAAGGATATGCTTCCGATCGAATATTTGCTCCTTATACTGTTTACAAGGGCAAAGCTGCATTCTCGTTGATCCCTTGTCTTCCAACTTTCACTAAGTTGAATTCTGGGACTGTTGTAGTTGATCGACGTGGTTCAATCATGATGACTTTCATGCATTCTATTGGAGAGCGCAAATATGACTGGGAGAAAAGACAAAGATTTGCTCTCTCAGCAACTGAAGTTGGTTCTTTGATAACAATGGGCGCTCAAGATTCCTGTGATTTCTTTCATGACCCTTCAATGTTATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGCCTCATGCAAATGGCTACTTTGTGTCTTTGACTGTTGTCAACAACCTGTTAAACACCAATGACTACTTCAGTGTTCCTGTCACAACTGCTGAGTTTGCTGTAATGAAGACAGCTTGCAGTTTTGCACTGCCACACATTATGGGTTGGGACCAGATAACTAATCAACAATCCAGAGGCATAGATGATCTTCAAGCAAAGGGTGACTCTAAAGTTTCAGACTTGGAATGGGAAAAATGA 708 0.4223 MFKLSRMLPLTSTSRHRLLEVLSSRKVEVGDRLSHSAGISTATNNYAAKGYASDRIFAPYTVYKGKAAFSLIPCLPTFTKLNSGTVVVDRRGSIMMTFMHSIGERKYDWEKRQRFALSATEVGSLITMGAQDSCDFFHDPSMLSSNAGQVRKSLSIKPHANGYFVSLTVVNNLLNTNDYFSVPVTTAEFAVMKTACSFALPHIMGWDQITNQQSRGIDDLQAKGDSKVSDLEWEK* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2099 235 Pfam Whirly transcription factor 62 194 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gso19g2099 235 SUPERFAMILY ssDNA-binding transcriptional regulator domain 53 214 IPR009044 GO:0003677|GO:0006355
Gso19g2099 235 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 235 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gso19g2099 235 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 235 - -
Gso19g2099 235 Gene3D Transcriptional Coactivator Pc4; Chain A 46 217 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2099 Gso-Chr19 49535129 49539085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2099 40 235 Whirly Transcription Factor Family AT1G71260 61.165 3.90e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Gso19g2099 Whirly 6.8e-52 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2099 - - gmx:100817863 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2099 19 49535129 49539085 Gso3g2145 3 46704509 46708012 GST