Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2097 ATGGAACCTATTGACAACCATCTCACCTCTTTCTTCCACCACCACCAGCAACAACAACAACACCACCAGCACCAGCACCAGCATCCGCCGCCGCCGCCGCCGACCACGGCGTCGCCGACCAACGGTCTCTTGCCGAACGCGGATGGGTCCCACATGCTGTACCCTCACTCGGTCGCGTCCGCGGTGTCGTCGCAGCTTGAACCGGCGAAGCGGAAGCGGGGGCGGCCGAGGAAGTACGGCACGCCGGAGCAAGCTCTGGCCGCGAAGAAAGCCGCTACGACGTCGTCTCAGTCGTTCTCTGCGGACAAGAAGCCCCACTCTCCGACCTTCCCTTCCTCTTCTTTCACTTCCTCCAAGAAATCCCTTTCCTTCGCTCTAGGCAATGCAGGGCAAGGGTTCACTCCGCATGTGATTTCTGTTGCCGCTGGTGAGGATGTTGGCCAGAAAATTATGTTATTTATGCAACAAAGTAGGCGTGAGATGTGTATTCTGTCTGCATCTGGTTCCATCTCTAATGCCTCTCTTCGCCAGCCAGCAACCTCAGGAGGCAGCATTACCTATGAGGGTCGGTTTGAGATTATTTCACTTACTGGTTCTTATGTCCGTAATGAACTTGGAACTCGAACTGGTGGTCTCAGTGTATGCTTATCTAATACTGACGGGCAAATCATAGGTGGTGGAGTTGGTGGGCCACTTAAAGCAGCTGGTCCAGTTCAGGTCATCGTTGGAACATTCTTTATTGACAACAAGAAAGATAATGGTGCTGGTTTAAAAGGTGATGCCTCTGCCAGCAAGTTGCCATCTCCAGTTAGTGAACCGGTATCAAGTTTAGGTTTCCGCCAATCAGTTGACTCTTCCAGTGGTAATCCAATCCGCGGAAATGATGAGCATCAAGCTATGGATGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCATGGAACACCTCCCCGATCCACAGACTGGGGTCGTCCGGATTCAAGAAATACCGGTTTTGAGTTGACAGGTCATGGGGCGCACCAGTCTCCTGAGAATGGAGGCTATGACCAAATTCCCGATTGA 1062 0.5226 MEPIDNHLTSFFHHHQQQQQHHQHQHQHPPPPPPTTASPTNGLLPNADGSHMLYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATTSSQSFSADKKPHSPTFPSSSFTSSKKSLSFALGNAGQGFTPHVISVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGSITYEGRFEIISLTGSYVRNELGTRTGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDNKKDNGAGLKGDASASKLPSPVSEPVSSLGFRQSVDSSSGNPIRGNDEHQAMDGSHFMIQQLGLHGTPPRSTDWGRPDSRNTGFELTGHGAHQSPENGGYDQIPD* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2097 353 MobiDBLite consensus disorder prediction 258 298 - -
Gso19g2097 353 CDD DUF296 134 245 IPR005175 -
Gso19g2097 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 135 245 IPR005175 -
Gso19g2097 353 MobiDBLite consensus disorder prediction 88 116 - -
Gso19g2097 353 MobiDBLite consensus disorder prediction 1 116 - -
Gso19g2097 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 131 245 - -
Gso19g2097 353 MobiDBLite consensus disorder prediction 268 293 - -
Gso19g2097 353 Gene3D - 135 259 - -
Gso19g2097 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 26 342 - -
Gso19g2097 353 ProSiteProfiles PPC domain profile profile. 129 270 IPR005175 -
Gso19g2097 353 MobiDBLite consensus disorder prediction 310 353 - -
Gso19g2097 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 342 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2097 Gso-Chr19 49510662 49516467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2097 48 353 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 52.711 2.74e-87 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2097 - - gmx:100816781 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2097 19 49510662 49516467 Gso19g2097 19 49510662 49516467 ECH
Gso19g2097 19 49510662 49516467 Gso3g2142 3 46680697 46686765 GST