Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2094 ATGAGTTCCTCAAACTTTGAATCCCCTTACGAGTACTCTTGTTCTTCTTCATCCTCGCGTCATAATCAGTATTCCCTTCCTTTCAACCACAATGACTCGCAAGAAATGCTCCTTTACCAAGTGCTGACACAGGCTGGTGCAACTTCCTCGGTGTCTCATGGTTCAGGTAGTGTTGTGGAAGCAGAGGTTTCGGTTTCGTACAGAGGGGTTCGAAGGAGGCCCTGGGGGAAGTTTGCGGCGGAGATAAGGGACTCTACGAGGAACGGAGTGAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGCTGCTGCGTTGGCTTACGACCAGGCCGCGCTGGTCATGAGAGGGTCCATGGCAGTGTTGAACTTCCCAGCTGAGATTGTTCGCCAATCGCTTCGGAACATGGAGCAGTACGGTAGTTTCCAAGAAGGCTCTTCTCCAGTTCTGGAGTTGAAGAAGAGGCACTCCATGAAGAGAAAATCAGAGACCAAGAAGCACCAACTCCACGATGTGATGGTGTTGGAGGACTTAGGGGCAGAGTATTTGGAACACCTTCTTACTCTCTCCCAGGATATGGATATGGATGCTTGTTAG 594 0.5084 MSSSNFESPYEYSCSSSSSRHNQYSLPFNHNDSQEMLLYQVLTQAGATSSVSHGSGSVVEAEVSVSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALVMRGSMAVLNFPAEIVRQSLRNMEQYGSFQEGSSPVLELKKRHSMKRKSETKKHQLHDVMVLEDLGAEYLEHLLTLSQDMDMDAC* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2094 197 Pfam AP2 domain 67 116 IPR001471 GO:0003700|GO:0006355
Gso19g2094 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 20 190 - -
Gso19g2094 197 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Gso19g2094 197 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Gso19g2094 197 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Gso19g2094 197 PANTHER DNA-BINDING DOMAIN 20 190 IPR044808 GO:0003700|GO:0009873
Gso19g2094 197 Gene3D AP2/ERF domain 66 126 IPR036955 GO:0003700|GO:0006355
Gso19g2094 197 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
Gso19g2094 197 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Gso19g2094 197 CDD AP2 67 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2094 Gso-Chr19 49492593 49493568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2094 26 191 AP2-EREBP Transcription Factor Family AT3G23240 52.486 2.04e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso19g2094 AP2 7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2094 K14516 - gmx:100787732 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2094 19 49492593 49493568 Gso19g2094 19 49492593 49493568 ECH
Gso19g2094 19 49492593 49493568 Gso13g0916 13 23498312 23498982 PCT