Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2087 ATGACGAGAACTCCTTGTTGTGAGAGAATGGGATTGAAGAAGGGACCTTGGACAGCTGAAGAAGATCAGATATTGGTTTCTCATATTCAACAATATGGCCATGGAAACTGGCGTGCCCTTCCTAAACAAGCTGGTTTGTTAAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATAAATTACTTGAGGCCAGATATTAAACGAGGGAAATTCAGCAAAGAAGAAGAACATACCATCCTAAAGCTACATGGAATTCTTGGAAACAGATGGTCTGCTATAGCGGCAAGCTTACCCGGAAGAACAGACAACGAAATAAAGAATTTTTGGCATACCCATTTGAAGAAGAGGATCCAGAAAAGTGGAGTGCACAATGGCAATGCTTCCTCACGTATCTTGCAAGAGGCACAAGCAAATACTAGTTTGGATGCATCAAGTGCTGCTTCTAGTACTGTCACTGCAAATGTAATGATTGCCAATTACGGTTTACCCGTAAGGAATATTAATCCACCTATTGCAGGATTTTACGGTGCAGTCTCCTCAGATACTTTTGGAGAAATTGAGGACAATCATGGTTCTTGTCAGCTCAGTGAAGAAATGGAATTTTGGTACAATATATTTATCAAATCAGGGCAAACATCATGA 639 0.41 MTRTPCCERMGLKKGPWTAEEDQILVSHIQQYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEHTILKLHGILGNRWSAIAASLPGRTDNEIKNFWHTHLKKRIQKSGVHNGNASSRILQEAQANTSLDASSAASSTVTANVMIANYGLPVRNINPPIAGFYGAVSSDTFGEIEDNHGSCQLSEEMEFWYNIFIKSGQTS* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2087 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso19g2087 212 CDD SANT 69 112 IPR001005 -
Gso19g2087 212 CDD SANT 16 61 IPR001005 -
Gso19g2087 212 PANTHER MYB TRANSCRIPTION FACTOR 1 210 - -
Gso19g2087 212 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 210 - -
Gso19g2087 212 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso19g2087 212 SMART sant 66 114 IPR001005 -
Gso19g2087 212 SMART sant 13 63 IPR001005 -
Gso19g2087 212 Pfam Myb-like DNA-binding domain 17 76 - -
Gso19g2087 212 Gene3D - 13 66 - -
Gso19g2087 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso19g2087 212 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso19g2087 212 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Gso19g2087 212 Gene3D - 68 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2087 Gso-Chr19 49405078 49406663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2087 1 205 MYB Transcription Factor Family AT2G31180 49.787 1.57e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso19g2087 Myb_DNA-bind_6 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2087 K09422 - gmx:102663040 431.795