Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2083 ATGTACACACCTTGTGCAGGACAGACAAAGCTGATTCACTTAGGAGCCTCAAGAGCTATGTCTACATCTTCTCGTGCTCTTCCCACTCCCTTGGAAAACAAGTATATGAAACCCCCAGATTCTTTTCAGCTTTCACCCGTCAGAGATCTGACTGCAAATTCTGCCTCATCAAATTCAATCAGAAGTGCTGGGAAGATGTTGTCTTCACCTTCTGAATGTCCCGATGATATCCCTTTTTCCTTTGTTTCTCAGACATCAGGTGACAATGTGTCTTCCGAAATTCATTCAACAGCATTGATTTCTCACCCTCAAGATAATGAAGATCTTTCCTGGGGACCAGATCCATTTCAGGATATTCTTGGCTTTCCTGAAAATGTTTCTGTCCAGCATGATCAGGTGCAAAACAATGGTTGTTACATAAATGATGATAATGTCAAAAGATCTGATTTTGGGGAGTGGGTTGATCAGTTAATGTCAATTGATGATTCTCTTCACCCGAACTGGAGTCAACTTCTTGGTGATGACAATGTAGCAGAACCAAAACCAAAGGCATCTCATGTTCCTCAGCAGCAGCATATAGCATCTGTAGAAGTTGTTGGCAATTCAGCATCAACTGCACCGCAGACTAAGCCTAGAATGCGTTGGACTCCAGAACTTCACGAGGCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGTAGTGATAAGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAGAAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAGGAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATTTGAAAACGAGTAAGGGGATCACTGAAGCATTACGTTTACAGATGGAACTCCAGAAGCGACTTCACGAACAACTTGAGATCCAAAGAAAGTTGCAGATTCAAATTGAAGACCAAGGGAAACGTCTTCAGATGATGTTTGAGAAACAGGGAGAGATGGGTGACAACAAGGTTAATGGCTCCTCGGACACAAACGAGGAAGGCGACAAATTTGAAAGCATTCCAAAAGCCATGCCTGAAGAGAAGGATTCAAGCACAAGAAAACAAATAGCAGGTGAAGCTGAAGAAGTGATCAATGAAGATGAAGCTGCACCACCCACAAAACGGGTGAAAAGTTCATAA 1209 0.4235 MYTPCAGQTKLIHLGASRAMSTSSRALPTPLENKYMKPPDSFQLSPVRDLTANSASSNSIRSAGKMLSSPSECPDDIPFSFVSQTSGDNVSSEIHSTALISHPQDNEDLSWGPDPFQDILGFPENVSVQHDQVQNNGCYINDDNVKRSDFGEWVDQLMSIDDSLHPNWSQLLGDDNVAEPKPKASHVPQQQHIASVEVVGNSASTAPQTKPRMRWTPELHEAFVEAVNQLGGSDKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPEPSEGNSEKKVTPMEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIEDQGKRLQMMFEKQGEMGDNKVNGSSDTNEEGDKFESIPKAMPEEKDSSTRKQIAGEAEEVINEDEAAPPTKRVKSS* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2083 402 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 21 402 - -
Gso19g2083 402 MobiDBLite consensus disorder prediction 340 402 - -
Gso19g2083 402 Gene3D - 209 268 - -
Gso19g2083 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 21 402 IPR044848 GO:0003700
Gso19g2083 402 MobiDBLite consensus disorder prediction 18 46 - -
Gso19g2083 402 SUPERFAMILY Homeodomain-like 208 264 IPR009057 -
Gso19g2083 402 Pfam Myb-like DNA-binding domain 212 263 IPR001005 -
Gso19g2083 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Gso19g2083 402 Pfam MYB-CC type transfactor, LHEQLE motif 297 341 IPR025756 -
Gso19g2083 402 MobiDBLite consensus disorder prediction 351 402 - -
Gso19g2083 402 Coils Coil 298 318 - -
Gso19g2083 402 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 264 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2083 Gso-Chr19 49363648 49367746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2083 17 377 G2-like Transcription Factor Family AT4G28610 43.719 3.51e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso19g2083 Myb_DNA-binding 9.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2083 - - gmx:100813604 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2083 19 49363648 49367746 Gso19g2083 19 49363648 49367746 ECH
Gso19g2083 19 49363648 49367746 Gso3g2126 3 46535323 46539637 GST
Gso19g2083 19 49363648 49367746 Gso10g0340 10 3617827 3624380 PCT