Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2068 ATGGGGGAAGTAGAGCAACAAGTACGGTTCCAGCAGCAGGTAGAAACGGAGTTTCAGCATTTGTCACTGAAGAAAAGGAAGCGCTGTTTGTCGAAGCAGCAATCGATTTTGGAGGCGCCGCGAGACATTGCGTGGGAGAGAAAGAGGACGACGAGGACTAGGAGGAACAGTTTTCGCAATTGTGATGATGTCACGGACGATGATCTTCACGAGCTTAAAGGGTGCATAGAGTTAGGGTTCGGATTCAACGAGGAAAACGGGCAGAAACTGTGCAACACCTTGCCGGCTCTCGACCTCTATTTCGCCGTCAATCGCCAGTTGTCACCGGTCTCCACCCCTCATAGCCGCCCTTCTTCTTCCTTTGGGAGCCCCGTCAGTAGTGCACCGCCGCCTGATTCTGATTCTTGGAAGATTTGTAGTCCAGGGGACGACCCTGAACATGTAAAGACCAAGTTGAGACACTGGGCTCAGGCTGTAGCTTGTTCGTTAATGCAGTCTCATTGAAGTGTGGGATGTATATTCTAGATATGCACAGAGAACGAGGAGGAGGAAAACAAAATACGGAAGCAGAAAACTAAGGACTACATTACTCCTATGGCTCCCGATGCTTCCGACGCACTTGCAGTAAGGCAGAAAGTTCAATTATTTCTGAACGCGGCTCGTACTGGTTCAATTGATCTCTTGAAGAAATTGGCGTTGCAGCTGGACGAGGGCAAGGATTTGGCGAAATCGGTGGAAGCAATAAAGGACGCCAACAAGAGAGGAGCACTGCATTTTGCCGCGCGAGAAGGCCAAACCTCTGTTTGCGAGTACCTCTTAACCGATTTGAAGCTCTCTGTCGATTCTCAAGATGATGATGGCGAGACTGCACTCATTCATGCTGCTCGTCAGGGACATACCGCCACCGCTAAATATCTGATTGACCACGGTGCTGATCCTACTGTGGCTAGCAATTTAGGGGCCACGGCATTACACCATTCTGCGGGGATAGGAGATGCTGAGCTGCTCAAGTACTTGCTGTCCAGGGGAGTTAATCCTGATCTAGAAAGTGATGCGGGAACACCTTTGGTTTGGGCTGCTGGTCATGCCCAACCAGCTGCTGTCAGTGTACTGTTGGAACATGGTGCAAATCCGAATGCCGAAACTGATGATGGTATTACCCCACTCCTTTCAGCTGTGGCAGCCGGTTCTCTAGCATGCTTAGAGCTGTTAATTCAGGCAGGTGCTAAAGCAAATATAAGTGCTGGTGGAGCAACTCCTTTGCACATCGCAGCTGATAATGGAAGTCTTGAACTATTAAATTGTTTATTGAAAGTGGGAGCTGATCCTGATGTCTCTGACGAGGATGGTGTCAAGCCAATACAAGTTGCTGCTGCAAGGGGCTATCCAAAAGCTGTTGAGATATTGTTCCCCTTGACGTCCAAAGTAGATACTATTCCTACTTGGACTGTTGATGGGATACTTGAGTATATGCAATCTGAAACTAGAAAGCAACAGGATGAATCGATAAATGCAAAAGAAACTAATCAGCCCAAGGAAGCTGATTTTCCGGAGCAAAATGTCCCTGAGGTGGCACCTGAAGCAAAAAAGAGAGCAGCAGAAGCAAAGTCAAGAGGGGATGGGGCTTTTAAAAGGAATGACCATCATATGGCTATAGATTTTTATACCCAAGCAATTGATCTGAACCCCATTGATGCTACTTTGCTATCCAATAGAAGTCTCTGTTGGATTAAGTTGGGCCAAGCTGAGCATGCTTTAGCTGATGCAAAGGCCTGTAGAGCTTTAAGACCAGATTGGCCAAAAGCTTGTTATAGGGAAGGAGCGGCTCTGCGTTTGTTGCAGAAATTTGATGAAGCTGCAAATGCTTTTTATGAGGGAGTAACGCTTGATCCTGAAAATAAGGAGCTTGTAAATGCGTTCAGGGAAGCTGTCGAGGCTGGGAGGAAATTTCATGGAACGGCTGAAAATAAATCATAG 1977 0.474 MGEVEQQVRFQQQVETEFQHLSLKKRKRCLSKQQSILEAPRDIAWERKRTTRTRRNSFRNCDDVTDDDLHELKGCIELGFGFNEENGQKLCNTLPALDLYFAVNRQLSPVSTPHSRPSSSFGSPVSSAPPPDSDSWKICSPGDDPEHVKTKLRHWAQAVACSLMQSH*SVGCIF*ICTENEEEENKIRKQKTKDYITPMAPDASDALAVRQKVQLFLNAARTGSIDLLKKLALQLDEGKDLAKSVEAIKDANKRGALHFAAREGQTSVCEYLLTDLKLSVDSQDDDGETALIHAARQGHTATAKYLIDHGADPTVASNLGATALHHSAGIGDAELLKYLLSRGVNPDLESDAGTPLVWAAGHAQPAAVSVLLEHGANPNAETDDGITPLLSAVAAGSLACLELLIQAGAKANISAGGATPLHIAADNGSLELLNCLLKVGADPDVSDEDGVKPIQVAAARGYPKAVEILFPLTSKVDTIPTWTVDGILEYMQSETRKQQDESINAKETNQPKEADFPEQNVPEVAPEAKKRAAEAKSRGDGAFKRNDHHMAIDFYTQAIDLNPIDATLLSNRSLCWIKLGQAEHALADAKACRALRPDWPKACYREGAALRLLQKFDEAANAFYEGVTLDPENKELVNAFREAVEAGRKFHGTAENKS* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2068 656 MobiDBLite consensus disorder prediction 111 141 - -
Gso19g2068 656 ProSiteProfiles Ankyrin repeat region circular profile. 382 411 - -
Gso19g2068 656 ProSiteProfiles TPR repeat profile. 598 631 IPR019734 GO:0005515
Gso19g2068 656 SMART tpr_5 530 563 IPR019734 GO:0005515
Gso19g2068 656 SMART tpr_5 564 597 IPR019734 GO:0005515
Gso19g2068 656 SMART tpr_5 598 631 IPR019734 GO:0005515
Gso19g2068 656 MobiDBLite consensus disorder prediction 493 511 - -
Gso19g2068 656 ProSiteProfiles Ankyrin repeat profile. 414 446 IPR002110 GO:0005515
Gso19g2068 656 Pfam Protein of unknown function (DUF1685) 64 118 IPR012881 -
Gso19g2068 656 ProSiteProfiles Ankyrin repeat profile. 284 316 IPR002110 GO:0005515
Gso19g2068 656 MobiDBLite consensus disorder prediction 111 130 - -
Gso19g2068 656 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 204 653 - -
Gso19g2068 656 MobiDBLite consensus disorder prediction 493 522 - -
Gso19g2068 656 SUPERFAMILY TPR-like 529 641 IPR011990 GO:0005515
Gso19g2068 656 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 204 653 - -
Gso19g2068 656 PRINTS Ankyrin repeat signature 318 333 IPR002110 GO:0005515
Gso19g2068 656 PRINTS Ankyrin repeat signature 365 379 IPR002110 GO:0005515
Gso19g2068 656 Gene3D - 183 349 IPR036770 -
Gso19g2068 656 Gene3D - 350 508 IPR036770 -
Gso19g2068 656 ProSiteProfiles Ankyrin repeat region circular profile. 317 349 - -
Gso19g2068 656 SMART ANK_2a 349 378 IPR002110 GO:0005515
Gso19g2068 656 SMART ANK_2a 382 411 IPR002110 GO:0005515
Gso19g2068 656 SMART ANK_2a 284 313 IPR002110 GO:0005515
Gso19g2068 656 SMART ANK_2a 250 280 IPR002110 GO:0005515
Gso19g2068 656 SMART ANK_2a 317 346 IPR002110 GO:0005515
Gso19g2068 656 SMART ANK_2a 447 476 IPR002110 GO:0005515
Gso19g2068 656 SMART ANK_2a 414 443 IPR002110 GO:0005515
Gso19g2068 656 Pfam Ankyrin repeats (3 copies) 216 313 IPR002110 GO:0005515
Gso19g2068 656 Pfam Ankyrin repeats (3 copies) 318 378 IPR002110 GO:0005515
Gso19g2068 656 Pfam Ankyrin repeats (3 copies) 388 468 IPR002110 GO:0005515
Gso19g2068 656 ProSiteProfiles Ankyrin repeat profile. 349 381 IPR002110 GO:0005515
Gso19g2068 656 ProSiteProfiles Ankyrin repeat region circular profile. 284 310 - -
Gso19g2068 656 SUPERFAMILY Ankyrin repeat 214 468 IPR036770 -
Gso19g2068 656 ProSiteProfiles Ankyrin repeat region circular profile. 414 446 - -
Gso19g2068 656 ProSiteProfiles Ankyrin repeat profile. 317 349 IPR002110 GO:0005515
Gso19g2068 656 Gene3D Tetratricopeptide repeat domain 528 643 IPR011990 GO:0005515
Gso19g2068 656 ProSiteProfiles TPR repeat profile. 530 563 IPR019734 GO:0005515
Gso19g2068 656 ProSiteProfiles Ankyrin repeat profile. 382 414 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2068 Gso-Chr19 49229113 49245887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2068 255 464 Miscellaneous Gene Families AT5G02620 29.204 2.59e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2068 - - ccaj:109796523 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2068 19 49229113 49245887 Gso3g2106 3 46364861 46374812 GST