Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2065 ATGGAGGCAGAGCCAGACAAGTACAAGATGATCAACTTTGAAGAAACCGAGTTGCGACTCGGCCTGCCACTCAGTGGAAACGAGACGACGCTCAAAAACACTTGCAGTACTGGGAAGAGGGTTTTTTCGGATACTAGCGTGGATTTGAAGCTTAACCTTTCCTCAACCTCAAATAACGCCCCTCCTCCTGCAAAGCCACCCGCAAAGGCACAAGTGGTGGGGTGGCCACCAGTGAGGTCATTCAGAAAGAACATTGTAAACAACGTTCAAAGGAGTAACAACAACGATGGCGAAAAAGCCGCCACAAGTAGTAGCAACAATGTGAACATGGGAGCAGCTTTCGTGAAGGTGAGCATGGATGGTGCTCCCTATTTACGCAAGGTGGATTTGAAGATGTACAAGAGCCACCAAGAGCTGTTGGATGCACTGGCTAAAATGTTCAGTTCATTCACCATCGACAAGTGTAGTTCCCAAGGCATGAAAGACTTCATGAACGAGGGCAAATTGATTGATCTTCTCAACGGCTCTGATTACGTACCAACCTGTGAAGACAAAGATGGTGATTGGATGCTCGTGGGTGACGTACCTTGGGAAATACTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGCAATCGGGCTAGCACCAAGAGCAGTGCAAAAGTGCAAGAACAGAAGCTAG 693 0.4805 MEAEPDKYKMINFEETELRLGLPLSGNETTLKNTCSTGKRVFSDTSVDLKLNLSSTSNNAPPPAKPPAKAQVVGWPPVRSFRKNIVNNVQRSNNNDGEKAATSSSNNVNMGAAFVKVSMDGAPYLRKVDLKMYKSHQELLDALAKMFSSFTIDKCSSQGMKDFMNEGKLIDLLNGSDYVPTCEDKDGDWMLVGDVPWEILVESCKRLRIMKGSAAIGLAPRAVQKCKNRS* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2065 230 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 223 IPR003311 GO:0005634|GO:0006355
Gso19g2065 230 Gene3D - 106 224 - -
Gso19g2065 230 PANTHER AUXIN-INDUCED PROTEIN AUX28 8 223 - -
Gso19g2065 230 ProSiteProfiles PB1 domain profile. 112 212 IPR000270 GO:0005515
Gso19g2065 230 SUPERFAMILY CAD & PB1 domains 105 211 - -
Gso19g2065 230 Pfam AUX/IAA family 36 221 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2065 Gso-Chr19 49214851 49217280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2065 115 209 B3 DNA Binding Superfamily AT3G61830 32.632 1.94e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso19g2065 AUX_IAA 8.1e-77 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2065 K14484 - gmx:100803986 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2065 19 49214851 49217280 Gso19g2065 19 49214851 49217280 ECH
Gso2g1180 2 14701815 14705282 Gso19g2065 19 49214851 49217280 ECH
Gso19g2065 19 49214851 49217280 Gso3g2104 3 46357206 46359770 GST