Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2062 ATGAATCGTAGCGAATCGGAGTGGGCCTTTCAGCAGTTCCTACAGGAAGCTGCTGCTTCTTCTTCCTCTAATTCTGATCATCATCATCTTAAATTCAAAAACGAATTCAACATCAACATCCCTGTTACTACTACTTCTATTCAAAATATTAATGTTGATTCCCAAGACTACCATGCTATTCTTAAGACCAAGCTTAATCTCGCATGCGCTGCTGTTGCTATGACTCGGGGATCTTTGGTCAAATCTCAAAACCCTGCCACTTTCTCTGACAGTGGACCACAGGCATCTAATTCTTCTGAAGATGGATTGCAGGCTACCTTAAAAGGATCTGGCCCTTCTGGAAATGATCCCTCTAAATTACAAAATAAAGATGTCAAAGCACAAATTGGGATTCCTTCCTCATCTTCCATGCAAAACAAACCTGCTGTCGCAATGAGGCCAACGATAAGTGGATCATCAGGAGAACAATCAGATGATGAGGAAGTGGAGGGAGAGATTAATATGACTGAAAACATGACTCCTGTTGATGCAAAACGAGTAAGGAGGATGCTTTCTAATAGGGAGTCAGCCAGACGCTCAAGAAGGAGAAAGCAGGCTCATTTAACTGAGCTGGAGACACAGGTCTCCCAATTACGAAGTGAAAATTCTTCGTTGTTAAAGCGATTCACGGATGTGAGCCAGAAATACAATAATGCTGCAGTTGACAACAGAGTACTGAAAGCTGATGTTGAAACATTAAGAACAAAGGTGAAGATGGCTGAAGAGACAGTGAAAAGAATTACTGGGTTGAACCCAATGCTTCATGCCATAACTGAGATGTCATCAATGGCAATGCCATCGTTTGATGAAAGTCCTTCTGAGACATCAGCTGATGCTGCTGTTTCTGTGCAAGAAGACCCAAATCATCACCGTTGTCAACCCACTTCTAATAATGGGTTGGGAGGCATTTCTTCAATTGAAACTGTGCAGCAGAATGTTGCAGCAGTGGTAGGTGGCAACAAAACGGGGAGAACAACTTCCCTGCATAGAGTGGCTAGCTTGGAACATCTTCAGAAGAGGATTCGTGGTGGTGCAGATTCACGTGGACCTCCTTCTAATGGAGAACAATAA 1110 0.4297 MNRSESEWAFQQFLQEAAASSSSNSDHHHLKFKNEFNINIPVTTTSIQNINVDSQDYHAILKTKLNLACAAVAMTRGSLVKSQNPATFSDSGPQASNSSEDGLQATLKGSGPSGNDPSKLQNKDVKAQIGIPSSSSMQNKPAVAMRPTISGSSGEQSDDEEVEGEINMTENMTPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRSENSSLLKRFTDVSQKYNNAAVDNRVLKADVETLRTKVKMAEETVKRITGLNPMLHAITEMSSMAMPSFDESPSETSADAAVSVQEDPNHHRCQPTSNNGLGGISSIETVQQNVAAVVGGNKTGRTTSLHRVASLEHLQKRIRGGADSRGPPSNGEQ* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2062 369 SMART brlzneu 174 238 IPR004827 GO:0003700|GO:0006355
Gso19g2062 369 MobiDBLite consensus disorder prediction 279 316 - -
Gso19g2062 369 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 176 230 IPR004827 GO:0003700|GO:0006355
Gso19g2062 369 MobiDBLite consensus disorder prediction 80 155 - -
Gso19g2062 369 Pfam bZIP transcription factor 177 229 IPR004827 GO:0003700|GO:0006355
Gso19g2062 369 Pfam Basic leucine-zipper C terminal 245 358 IPR020983 -
Gso19g2062 369 PANTHER BZIP TRANSCRIPTION FACTOR 1 350 - -
Gso19g2062 369 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 181 196 IPR004827 GO:0003700|GO:0006355
Gso19g2062 369 PANTHER BASIC LEUCINE ZIPPER 63 1 350 - -
Gso19g2062 369 Gene3D - 177 232 - -
Gso19g2062 369 Coils Coil 236 256 - -
Gso19g2062 369 SUPERFAMILY Leucine zipper domain 178 229 IPR046347 GO:0003700|GO:0006355
Gso19g2062 369 Coils Coil 187 221 - -
Gso19g2062 369 MobiDBLite consensus disorder prediction 80 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2062 Gso-Chr19 49181817 49187069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2062 1 267 bZIP Transcription Factor Family AT4G02640 39.262 8.29e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso19g2062 bZIP_C 5.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2062 K25784 - gmx:100798673 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2062 19 49181817 49187069 Gso19g2062 19 49181817 49187069 ECH
Gso19g2062 19 49181817 49187069 Gso3g2101 3 46327372 46331492 GST
Gso19g2062 19 49181817 49187069 Gso10g1481 10 41209517 41212727 PCT
Gso10g1481 10 41209517 41212727 Gso19g2062 19 49181817 49187069 PCT