Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2050 ATGTTCGATGGAGCACCAGACCAGTTCCACCAATTCATAGCACCAAGGACCACTCTTCCTCTCCACCTGTCTTTCCCTCTCCACCATCATGCCTCTTCAACCCCTCCTCCAAATACCTTCCTACCCTTTGATCCATATAACCCTTCTTCTCATCATCTCTTGCCATCACTCCAAACCAATCATCTCTTGCACCCCCCTACTACTTCCCCCACCCACAAACACGAACAAGACAAGGTTATTGCTCCAATCGTCAACAACAATGAAGAGATTCAAAGAGATCAAAGACAATTACCAGATCAGCTAACCGATTCCTGGACCAACGATGAAGTGCTTGCACTTTTCAGAATCAGATCTAGCATGGAAAATTGGCTCCCAGAGCTCACATGGGACCATGTCTCAAGGAGGCTAGCAGAGGTTGGGTTTAAGAAGAGTGCTGAGAAGTGCAAGGAGAAGTTTGAAGATGAGAGTAGATATTTCGACAACATCAATAACTACGGCAAGAACAATTTCCGGTTCCTTATTAGCGAGCTGGAGGAGCTTTGTCAAAACTCTGATCCTGGTGCTCATGATCATAATGGGGTTGTAGTGAGGAGTGAAAAGACTCACCACCTAGGAGGACACGCATTGGAAGAAAATTCGAGAGACATTGAAACAACTACAGCGACCAAACGATGTGATATTGGAAGTGACACAGTGGTGGAGAAGTCAAATTCAAAGGTGCGCAAGAGGAAGAGGCGTGATAGGTTCGAAATGTTCAAGGGTTTTTGCGAGAGTGTTGTCAACAAGATGATGGCTCAGCAAGAAGAGACTCACAACAAGCTCCTCGAGGACATGGTGAAAAGGGACCAAGAGAAGTTCGCCAGAGAAGAAGCTTGGAAGAAGCAAGAGTTGGATAGGATGAAAAAGGAGCTTGAGATTATGGCACAAGAGCAAGCCATTGCCGGGGATAGACAAGCCACCATAATTGAATTCTTAAAGAAATGTGCAACAACAACAATAACTTCATTATCCCCTCCAAGCCAAAATGCCAAGTACTACATCACAAATGATTCAAATCTTCCAAATTGTGCATCGCATTCGCAAAACCCTAATAATCCTTCCAATGAAGACAACAATCTTGAGCCAACACCTTCTTCTAAAATGATTCAAAATCATGGCCAAACTACGTTGGGAGCAGAAAACCCTAGCACAAGTGACACATTATTACAAGTTCCTTCTTCCTCCAACTCTTCCCCAACAACCCACAACCCTAGTTCTTCACTCAATAGCCACAATAACATTATCCCACTAGAGTCAAATTCAGTTTCGACATACAAGCCCACCTCAACAACCCCTATGGCCAGCAGTGAGAATTCGAAAGATGATATTGGGAGAAGATGGCCAAGAGATGAAGTGTTAGCACTGATAAACCTAAGGTGCACAAGTCTAAGCAGCAATGAAGAGAAAGAAGGAAACAAGGGTCCTCTGTGGGAGAGAATCTCGCAAGGGATGTCAGCGCTGGGATACAAGAGAAGTGCAAAGAGGTGCAAGGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACCAAGGATAATGTTAATAAGAAAAGGTCCCTTAACTCTAGGACATGTCCTTATTTCCATCAACTGAGTTGCTTGTATGGTCAAGGAAAAATCGTGCCGCAGTCAGAAAGGGAAGGGAACTACTGCTTGAATCCAACCCCGAATTCCGGTCAAGTGCCACCGGATGATGATCATCAAGTCCAAGACGATGAGTCTTCTCAAGTGGGGTCTGCTGGTTTGGTTCAGTATGCATGTTGA 1803 0.4448 MFDGAPDQFHQFIAPRTTLPLHLSFPLHHHASSTPPPNTFLPFDPYNPSSHHLLPSLQTNHLLHPPTTSPTHKHEQDKVIAPIVNNNEEIQRDQRQLPDQLTDSWTNDEVLALFRIRSSMENWLPELTWDHVSRRLAEVGFKKSAEKCKEKFEDESRYFDNINNYGKNNFRFLISELEELCQNSDPGAHDHNGVVVRSEKTHHLGGHALEENSRDIETTTATKRCDIGSDTVVEKSNSKVRKRKRRDRFEMFKGFCESVVNKMMAQQEETHNKLLEDMVKRDQEKFAREEAWKKQELDRMKKELEIMAQEQAIAGDRQATIIEFLKKCATTTITSLSPPSQNAKYYITNDSNLPNCASHSQNPNNPSNEDNNLEPTPSSKMIQNHGQTTLGAENPSTSDTLLQVPSSSNSSPTTHNPSSSLNSHNNIIPLESNSVSTYKPTSTTPMASSENSKDDIGRRWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKYFRKTKDNVNKKRSLNSRTCPYFHQLSCLYGQGKIVPQSEREGNYCLNPTPNSGQVPPDDDHQVQDDESSQVGSAGLVQYAC* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2050 600 ProSiteProfiles Myb-like domain profile. 459 517 IPR001005 -
Gso19g2050 600 MobiDBLite consensus disorder prediction 561 577 - -
Gso19g2050 600 MobiDBLite consensus disorder prediction 354 458 - -
Gso19g2050 600 PANTHER - 13 593 - -
Gso19g2050 600 CDD GT1 458 524 - -
Gso19g2050 600 Gene3D - 105 161 - -
Gso19g2050 600 Gene3D - 460 522 - -
Gso19g2050 600 MobiDBLite consensus disorder prediction 559 593 - -
Gso19g2050 600 MobiDBLite consensus disorder prediction 354 451 - -
Gso19g2050 600 Pfam Myb/SANT-like DNA-binding domain 103 167 IPR044822 -
Gso19g2050 600 Pfam Myb/SANT-like DNA-binding domain 458 544 IPR044822 -
Gso19g2050 600 ProSiteProfiles Myb-like domain profile. 97 156 IPR001005 -
Gso19g2050 600 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 13 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2050 Gso-Chr19 49082205 49085838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2050 249 550 Trihelix Transcription Factor Family AT5G28300 45.659 1.89e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso19g2050 Myb_DNA-bind_4 1.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2050 - - gmx:100801868 1148.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2050 19 49082205 49085838 Gso3g2090 3 46247513 46251092 GST
Gso19g2050 19 49082205 49085838 Gso10g1473 10 41110507 41113033 PCT
Gso10g1473 10 41110507 41113033 Gso19g2050 19 49082205 49085838 PCT