Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2044 ATGAATCAGCTTCAAGCATCTGAGTTTGTTGAACTTGATCCAACTGCCAGATACGGCAGATACAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTATATAGAGCATTTGATGAGTACCAAGGGATTGAAGTTGCTTGGAATCAGGTTAAATTGTATGATTTTCTGCAGAGCCCTGAAGATCTCGAGAGGCTTTACTGTGAAGTTCATCTCCTCAAGACGTTGAAGCACAGAAGCATAATGAAATTTTACACTTCTTGGGTTGATACAGCGAACAGAAATATCAACTTTGTGACTGAAATGTTCACTTCTGGTACCCTTAGACAATATAGGCAAAAGCACAAGAGAGTTAACATTAGGGCAGTGAAGCATTGGTGTAGACAAATCCTGAGAGGGCTTCTCTATCTTCATAGCCGTGACCCACCTGTGATCCATAGAGATCTTAAATGTGATAATATTTTTGTCAACGGAAACCAAGGGGAAGTTAAGATTGGGGATCTTGGGTTGGCAGCAATTGTCCGCAAGTCCCATGCTGCTCATTGTGTAGGAACGCCCGAGTTCATGGCACCAGAAGTTTATGAAGAGTCGTATAATGAACTAGTTGACATATATTCCTTTGGGATGTGTGTATTAGAAATGGTCACATTTGAATATCCTTATAGCGAATGTAGCCATCCAGCACAAATCTACAAGAAAGTTATTTCTGGGAAGAAACCGGATGCCTTGTATAAAGTGAAGGATCCAGAAGTGCGAAAATTTGTTGAGAAATGCCTGGCAACAGTGTCTCTAAGGCTCTCTGCAAGGGAGCTTCTAGATGATCCTTTTCTTCAGATTGATGATTATGAGTATGATTTGGGACCGGTGGACAGTGGATCATTTGATGACTTGGGTCCTCTTACCCATCAGCCATTCTTTGATCTCCACCGGACCTATAGTAACATGAGTACTGAATACTCGAATGGCTTTGAATATGAAGGAGACTGGTATTCTCATCCAGCTGAGATTGAACCTAGTGGAATTGAACTTTTCGAGTGCCATGACGATGAAGCCTCTGAAGATGTTGACATAAGCATTAGAGGCAAGAGGAAAGATGACGGTGGCATCTTTTTGAGACTAAGAATTGCAGACAAAGAAGGCCATATTCGGAATATTTATTTCCCATTTGACACAGAGACGGACACAGCATTAAGTGTAGCAACTGAAATGGTTGCAGAACTCGACATTACTGATCAGGATGTTACCAGTATATCAGATATGATAGACGGGGAAATTGCTTCCTTGGTACCTGAATGGAAGCCAGGACCAGGAATTGAAGAAACTAACCATTATTTAAATAAAATTGTTTGTCACAATTGTGTGTCTAATCAAGGCAGAAAGAACTTGCAGCTTCCTCAATGTTGTAGGCATGGATGTGCTTCAATGCATGGGCGCTTCGAGGAGATTACCTTCCCATCTGAGTGTGACAATCATGTTAGAGGGGATGCACCTATCAAATCAAGCCAATCAGACTGCTTGCAGTATCAGGAGTCATGGAATCATCATGAAAGTTGTGAACTGAGTCCAGTAGAGTCTGACCAAAGTCATTCTGGCGAGCAATATGAACAATTTGATAAACCAGTATTAGCAGAAGACAAAGAAGGAAAGGGTATTTGGGAAAACAAGTTTGCACATGATCCAGGAAACCCCCCACGAAGTTTATCAGGAAATTATTTCTCTGCTATCCGTTTTTTATGTTGTGGCCCTGAGAATGAATATGAGAAAGAGGTTCAACAAGAAATGAGATGGATCAAAGCAAAACACGAAAGGGAGTCAAGGAAACTTAGGGATAAACTGTTTGGTATAGCAGCTAAATCTTCACATACCAGTAACAGAGAGCACAAAACCCAACAAGGCATTATGCCACCACTGCCACAAACAGTAAACGGAGTGGACCATGGTATTCACTTGAAACCCTTGGGTAATTTCTGGAATTATGATTCAGTTGCCGTTCTCAAGTCCAAAAGAACCACCCCAATTTGGGCACCCAAAGGGCCCAAAATTGTGAGGTGA 2049 0.4168 MNQLQASEFVELDPTARYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEVHLLKTLKHRSIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCRQILRGLLYLHSRDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAIVRKSHAAHCVGTPEFMAPEVYEESYNELVDIYSFGMCVLEMVTFEYPYSECSHPAQIYKKVISGKKPDALYKVKDPEVRKFVEKCLATVSLRLSARELLDDPFLQIDDYEYDLGPVDSGSFDDLGPLTHQPFFDLHRTYSNMSTEYSNGFEYEGDWYSHPAEIEPSGIELFECHDDEASEDVDISIRGKRKDDGGIFLRLRIADKEGHIRNIYFPFDTETDTALSVATEMVAELDITDQDVTSISDMIDGEIASLVPEWKPGPGIEETNHYLNKIVCHNCVSNQGRKNLQLPQCCRHGCASMHGRFEEITFPSECDNHVRGDAPIKSSQSDCLQYQESWNHHESCELSPVESDQSHSGEQYEQFDKPVLAEDKEGKGIWENKFAHDPGNPPRSLSGNYFSAIRFLCCGPENEYEKEVQQEMRWIKAKHERESRKLRDKLFGIAAKSSHTSNREHKTQQGIMPPLPQTVNGVDHGIHLKPLGNFWNYDSVAVLKSKRTTPIWAPKGPKIVR* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2044 682 ProSiteProfiles Protein kinase domain profile. 19 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g2044 682 Gene3D Transferase(Phosphotransferase) domain 1 102 281 - -
Gso19g2044 682 SUPERFAMILY Protein kinase-like (PK-like) 22 277 IPR011009 -
Gso19g2044 682 Gene3D Phosphorylase Kinase; domain 1 4 100 - -
Gso19g2044 682 Pfam Protein kinase domain 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g2044 682 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 4 670 - -
Gso19g2044 682 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 369 422 IPR024678 GO:0004674|GO:0005524
Gso19g2044 682 Gene3D - 366 432 - -
Gso19g2044 682 CDD STKc_WNK 17 276 - -
Gso19g2044 682 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 670 - -
Gso19g2044 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Gso19g2044 682 SMART serkin_6 19 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2044 Gso-Chr19 49035177 49038609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2044 7 481 MAP Kinase Kinase Kinase AT3G22420 57.905 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gso19g2044 Pkinase 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2044 K08867 - gmx:100272199 1391.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2044 19 49035177 49038609 Gso19g2044 19 49035177 49038609 ECH
Gso19g2044 19 49035177 49038609 Gso3g2085 3 46200403 46204020 GST
Gso19g2044 19 49035177 49038609 Gso10g1464 10 41035077 41038778 PCT
Gso10g1464 10 41035077 41038778 Gso19g2044 19 49035177 49038609 PCT