Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2041 ATGGCTTCTCAGCAACACGACGCCGTTTTCCGCGAAGAAGACATGGACGACGACGACGACGAGTCTCAGGAGGACGGAGACTACGAAGAAGAAGACGACGACGTTTTGGCCGACGACGAAGAAAACGAGCCCTCTCCCTCCACGGCTCTTGCCGTCACCGTCGCCGTCCCCGGTTCCTCCGTCTCCAACGGCGGTGCCGCTCCAATTTCGACGCCCACCGCCACCACCATCGTCGTCGCAGACTCCTCCGATCCGAAGCGGCGGCGCCTCGAGCCAGTCGAGGAGAAAAAGCCGCCGCCGACGCCGGACGACTCGCGGCGGCTGTTTCAGCGGCTGTGGACCGACGAGGACGAGATCGAGCTCTTGCAAGGCTTCCTAGACTACACCTCGCAGCGAGGATCCTCGCACCACAACGACACGGCTTTGTTCTACGACCAAATCAAGTCGAAGCTCCAACTCGATTTCAACAAGAACCAGCTCGTCGAGAAGATCCGAAGGCTGAAGAAGAAGTACCGAAACGTCCTCAACAAGATTGGCTCCGGCAAGGAATTCTCCTTCAAGAGCGCTCACGATCAAGCCACCTTCGAAATCTCGCGCAAGATCTGGAGCAACGTGACTCCAATCGGCGACAATTCCTTGGACGACGACGAAATCAACCCTAACCGTAGCCCCAACCCTAACCTTAATTTTAGCCCTATAATTCTTAAGAATGAAATGATTTTCAGGAACCCCGCGGAGAAGAAAACACCGAAACGCTCTCGGCCACGATCGGCGGTGAAAATCGAGCCAAATGACGGATCCGCGTCGAACAGAGATCATGATTGTATTAGCAATGCTACGCCTACTGCTACTGCTACTGCTGCTGCTACTAACACTACTCCTACTGCAGCTACTACTAATGATAACTGTAACAGTGGTTATGGAAATAACATACCGAGTATGATCGAGGAGACGGTGAGGAGTTGTTTGTCGCCGGTGTTGAAGGAGTTGATGGCAGGGGCCATGGGAGGAGGAGCGTTTGGAGCGAGAGGGTTTTCGTTGAACTTGAACCCTATGCCTTTGATGAATTGGAGTTTTGGCGGTGGGGAAATGGTGGATGAGAAATGGAGGAAACAACAGATATTGGAGTTGGAAGTGTACTCAAAGCGGTTGGAGCTGGTTCAGGATCAGATCAAGGCTGCTATGGAGGAGTTGCGGTCACACGGAGGAGGTTGA 1215 0.5383 MASQQHDAVFREEDMDDDDDESQEDGDYEEEDDDVLADDEENEPSPSTALAVTVAVPGSSVSNGGAAPISTPTATTIVVADSSDPKRRRLEPVEEKKPPPTPDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFSFKSAHDQATFEISRKIWSNVTPIGDNSLDDDEINPNRSPNPNLNFSPIILKNEMIFRNPAEKKTPKRSRPRSAVKIEPNDGSASNRDHDCISNATPTATATAAATNTTPTAATTNDNCNSGYGNNIPSMIEETVRSCLSPVLKELMAGAMGGGAFGARGFSLNLNPMPLMNWSFGGGEMVDEKWRKQQILELEVYSKRLELVQDQIKAAMEELRSHGGG* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2041 404 MobiDBLite consensus disorder prediction 241 273 - -
Gso19g2041 404 Coils Coil 377 397 - -
Gso19g2041 404 MobiDBLite consensus disorder prediction 1 106 - -
Gso19g2041 404 PANTHER BNAANNG10740D PROTEIN 1 402 - -
Gso19g2041 404 PANTHER BNAANNG10740D PROTEIN-RELATED 1 402 IPR007592 GO:0006355
Gso19g2041 404 MobiDBLite consensus disorder prediction 82 106 - -
Gso19g2041 404 MobiDBLite consensus disorder prediction 12 41 - -
Gso19g2041 404 MobiDBLite consensus disorder prediction 241 259 - -
Gso19g2041 404 MobiDBLite consensus disorder prediction 46 80 - -
Gso19g2041 404 Coils Coil 157 177 - -
Gso19g2041 404 Pfam Protein of unknown function, DUF573 109 203 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2041 Gso-Chr19 49013437 49015168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2041 47 404 GeBP Transcription Factor Family AT5G28040 46.859 5.18e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Gso19g2041 DUF573 1.6e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2041 - - gmx:100779712 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2041 19 49013437 49015168 Gso3g2082 3 46183847 46185685 GST
Gso19g2041 19 49013437 49015168 Gso10g1461 10 41017628 41019396 PCT
Gso10g1461 10 41017628 41019396 Gso19g2041 19 49013437 49015168 PCT