Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2028 ATGGGGTGTGTGATTAGCAGGGAAGTGTCGAAGGGGGTAATCTCTGATGTGAAGGAGGAGAGGGATTTGAGTGGTGAGAGTAAGAGGAAGGTTGATGGAGTGTCAGGGAGCAAAGATGAGGTGGTAGAGGTTCAGAATGGTGAGAAGGAGAAGGAGAAAGGTGGTGAAGGGGTGCAGCGTGGCAAAAGGAGAAGATCGAAGGCGAATCCGAGGCTGAGCAATCCGCCAAAGCATTTGAGGTGGGAGCAGGTTGCAGCTGGGTGGCCACCGTGGCTCACTGCAGTGTGTGGGGAAGCACTCGGTGGCTGGATTCCGCGAAAGGCCGACACCTTTGAGAAAATTGATAAGATTGGGCAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACATGATGACAGGTAAAATTGTTGCCCTAAAGAAGGTTCGATTTGATAATTGGGAACCTGAGAGTGTAAAATTCATGGCGAGAGAGATTCTTATTTTGCGAAGGTTGGATCATCCCAATGTTGTAAAGTTGCAAGGTTTAGTTACGTCAAGGATGTCCTGTAGTTTGTATTTGGTGTTCGATTATATGGAGCATGATTTGGCTGGACTTGCTGCAAGCCCAGGAATCAGGTTCACAGAGCCTCAGGTAAAATGTTACATGCATCAGCTGCTATCAGGACTTGAGCACTGTCATAACCGTCGTGTACTTCACCGTGATATTAAAGGATCAAATCTTCTTATTGACAATGAAGGAACACTTAAGATTGCTGACTTTGGACTGGCTTCTATTTTCGATCCAAACAATAAGCATCCCATGACTAGTCGTGTAGTAACCCTTTGGTATCGACCTCCTGAGTTGCTTCTTGGTGCCACAGATTATGGTGTGGGTGTAGACCTCTGGAGTGCCGGATGTATTTTAGGAGAGTTATTGGCTGGGAAGCCAATCATGCCTGGTCGTACAGAGTTCTTTACCACAGAACCTTATGCTTGCGATCCTTCAAGTCTTCCAAAATATCCCCCAAGCAAGGAAATGGATGCTAAACAACGGGATGATGAAATGAGGAGACTAAGAGCTGCAGGCAAAGCTCAGGCTGATGGTCCAAAGAAGCATCATACACGTGATCGTGCTGCAAAAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGATAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGCGAAAAGTTTCCTCCACCACATCAAGATGGACAAGTTGGTTTTCCTTTAGGATCTTCACATCACATTGATCCAGATACTGTTCCTACTGATGTCTCTTTTACTTCAACCTCCTATACTTATTCAAAGGAACCATTCCAAGCTTGGTCTGGTCCCATTGGAGTGCCAAAGCGGAAGAAACACACTGCAGGTGATGCATTGGACTTGTCAAAACCACAGAAAGATGCCCTCAAGGACATGGTTAGAGGAAAGAAAATTTTAGATATTAGTACATTCTTATAG 1491 0.4514 MGCVISREVSKGVISDVKEERDLSGESKRKVDGVSGSKDEVVEVQNGEKEKEKGGEGVQRGKRRRSKANPRLSNPPKHLRWEQVAAGWPPWLTAVCGEALGGWIPRKADTFEKIDKIGQGTYSNVYKAKDMMTGKIVALKKVRFDNWEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMEHDLAGLAASPGIRFTEPQVKCYMHQLLSGLEHCHNRRVLHRDIKGSNLLIDNEGTLKIADFGLASIFDPNNKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLAGKPIMPGRTEFFTTEPYACDPSSLPKYPPSKEMDAKQRDDEMRRLRAAGKAQADGPKKHHTRDRAAKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQVGFPLGSSHHIDPDTVPTDVSFTSTSYTYSKEPFQAWSGPIGVPKRKKHTAGDALDLSKPQKDALKDMVRGKKILDISTFL* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2028 496 SUPERFAMILY Protein kinase-like (PK-like) 106 318 IPR011009 -
Gso19g2028 496 Pfam Protein kinase domain 111 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g2028 496 MobiDBLite consensus disorder prediction 15 63 - -
Gso19g2028 496 MobiDBLite consensus disorder prediction 15 76 - -
Gso19g2028 496 PANTHER OS01G0367700 PROTEIN 317 461 - -
Gso19g2028 496 PANTHER OS01G0367700 PROTEIN 53 317 - -
Gso19g2028 496 SMART serkin_6 111 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g2028 496 ProSiteProfiles Protein kinase domain profile. 111 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g2028 496 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Gso19g2028 496 Gene3D Phosphorylase Kinase; domain 1 99 193 - -
Gso19g2028 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Gso19g2028 496 Gene3D Transferase(Phosphotransferase) domain 1 194 391 - -
Gso19g2028 496 PANTHER CELL DIVISION PROTEIN KINASE 53 317 - -
Gso19g2028 496 PANTHER CELL DIVISION PROTEIN KINASE 317 461 - -
Gso19g2028 496 MobiDBLite consensus disorder prediction 329 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2028 Gso-Chr19 48879618 48884904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2028 103 317 Core Cell Cycle Gene Families AT5G10270 56.522 1.20e-84 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso19g2028 Pkinase 2.1e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2028 K08819 - gmx:100790750 757.673