Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2025 ATGGGCGCACAGAAGAAAAGGGTTTCAGAGGACCCCGACGAACTGGTGCGGGTTCCGTTGCAGGCCATTCTCTTGGCTGATAGTTTCACCACCAAGTTCAGACCTATCACACTCGAACGCCCCAAAGTGCTGCTGCCGCTCGTGAATGTTCCGATGATAAATTACACGCTCACTTGGCTCGAATCCGCTGGCGTCGAAGATGTTTTCGTTTTCTGTTGTTCTCATTCCAAGCAGGTCATTAGCTACCTCGAGAAATCTGAGTGGCTCTCTCAACCTAATTTTACGGTGACGACTGTAGAGTCGCAGAATTCTGTCAGCGCTGGAGATGCGCTACGTGTAATTTACGAGCGCAATGTGATACATGGAGACTTTGTCCTTATCAGTGGAGATACTGTAAGCAATATGTCTCTTACTCAAGCACTTCTAGAGCATAAAGAAAGGAAGAAGAAAGATAGTAATGCTGTAATGACTATGGTCATTAAACGGTCAAAACCTAATCCAGCTATCCATCAGTCTCGACTTGGTACTGATGAGCTTTTCATGGCCATTGATCCTAATACCAAGCAACTTCTGTATTATGAGGATAAGGCAGACCAATCAAAAGGAAAACTACATCTTGACAAGTCATTGCTTTTTGATAATCCTTCACTCTCTCTGCATCATGACAAGCAGGATTGTTACATTGACATCTGCTCACCTGAAGTCCTTAGCCTATTTACAGACAATTTTGATTACCAACATCTACGGCGTCATTTTGTCAAGGGATTGCTTGTTGATGATATAATGGGGTACAAAATTTTTGTTCATGAAATCCACTCGGATTATGCTGCAAGGATCGATAATTTCCGAGGCTACGACACCGTCAGCAAGGATATAATTCATCGATGGACATATCCACTAGTGCCAGATGTAATGAATTTTGGAAACACAGCTACTAAACTCGAACGGCAAGGAATGTACCGTGCTTCGGAAATATCACAATTGCAGTCTGCTGTTATTGGCCCTTTCACTGTCATAGGATCTGACACCAAAATTGGGAATAACACTAAAATTTCAAATTCTGTTATTGGTGAAGGATGTAAAATTGGGTCAAATGTTATCATAGAGGGATGCTATATATGGGATAACATCATCATAGAAGATGGCTGTAAACTCCAGCATGCAATTATATGTGATGGGGTGACTATAAAGTCGGGGGCTGTTCTGGAACCTGGTGTTATTTTGTCTTTTAAGGTTGTAGTTGGGCCAGAATTTGTTGTTCCTCCCTATTCAAAGGTATCTCTATTTCAGCAGCCAATTGAGGAAGATAGCGACGAGGAGCTTGAATATGCTGATAGTACTAGTGGTATTGTTTATTCTCCTGCTGTTATTCTAGGTATGGGTGGGGCTGGACATGTGTGGTCAACATGTGAAGGCAGCCATGAAGAAGAGTGGAGGCATTCGGTGGCGCCTATTCCTAAAGATAAAATTCTGGAGGCAATTAAAACTATGGAAGATGATCTGGAGTTAACTCATGATGATAGTTTTCTCCCACCTTCTGGAGAGCTGAAACCTAATTCTAATTATTCAGATGATGATGATCATGAAGATTCTAGAGATGACTCTTATTACTTTGATAAAGAGGTTGAAGCAACCTTTCTCAGGGCTGTGCATGAAAACATACAAGAAAGCCATCTGATCTTAGAGATCAATTCTTTGAAGTTGTCATACAATAAGCTAGCTGCTGATTGTGCTGGAGCTGTATTTTATGCCATGATGAAGTATGCTTTAGATACCCCCCATAGTTCAGCTGATGGTTTGCTTCAAAATGTTCAGGCTGTATTTACAAAATGGAAAAAGGCTCTTACATCCTATCTGACTGACATAGATGAGCAGATTGAAGTAATACTTAAATTTGAAGAAATGTGTGGGGAATCTGCTAAGGAGTTTGCTCCATTGTTCACAAGGATTTTGCACTACTTGTATAATGAAGATGTTTTAGAAGAAGATGCTATTTTGAGTTGGGAAGCCGAGTTAAAAGATGCTGACGAGGCAGATAAAGTTTTTGTTAAGCAGGCCCAAAAATTAATTCAGTGGCTAAAAGAGGCACCTGAAGAAGACGATGATGAAGAGGAATAG 2118 0.4108 MGAQKKRVSEDPDELVRVPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLTWLESAGVEDVFVFCCSHSKQVISYLEKSEWLSQPNFTVTTVESQNSVSAGDALRVIYERNVIHGDFVLISGDTVSNMSLTQALLEHKERKKKDSNAVMTMVIKRSKPNPAIHQSRLGTDELFMAIDPNTKQLLYYEDKADQSKGKLHLDKSLLFDNPSLSLHHDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFVHEIHSDYAARIDNFRGYDTVSKDIIHRWTYPLVPDVMNFGNTATKLERQGMYRASEISQLQSAVIGPFTVIGSDTKIGNNTKISNSVIGEGCKIGSNVIIEGCYIWDNIIIEDGCKLQHAIICDGVTIKSGAVLEPGVILSFKVVVGPEFVVPPYSKVSLFQQPIEEDSDEELEYADSTSGIVYSPAVILGMGGAGHVWSTCEGSHEEEWRHSVAPIPKDKILEAIKTMEDDLELTHDDSFLPPSGELKPNSNYSDDDDHEDSRDDSYYFDKEVEATFLRAVHENIQESHLILEINSLKLSYNKLAADCAGAVFYAMMKYALDTPHSSADGLLQNVQAVFTKWKKALTSYLTDIDEQIEVILKFEEMCGESAKEFAPLFTRILHYLYNEDVLEEDAILSWEAELKDADEADKVFVKQAQKLIQWLKEAPEEDDDEEE* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2025 705 SUPERFAMILY Nucleotide-diphospho-sugar transferases 18 366 IPR029044 -
Gso19g2025 705 CDD W2_eIF2B_epsilon 538 696 IPR044123 GO:0005085|GO:0031369
Gso19g2025 705 Gene3D Hexapeptide repeat proteins 316 433 - -
Gso19g2025 705 CDD eIF-2B_epsilon_N 20 236 IPR035543 -
Gso19g2025 705 SUPERFAMILY ARM repeat 538 696 IPR016024 -
Gso19g2025 705 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 8 300 IPR029044 -
Gso19g2025 705 Pfam Nucleotidyl transferase 22 162 IPR005835 GO:0009058|GO:0016779
Gso19g2025 705 ProSiteProfiles W2 domain profile. 532 703 IPR003307 GO:0005515
Gso19g2025 705 SMART 542_3 612 699 IPR003307 GO:0005515
Gso19g2025 705 Gene3D - 525 704 - -
Gso19g2025 705 CDD LbH_eIF2B_epsilon 338 416 - -
Gso19g2025 705 Pfam eIF4-gamma/eIF5/eIF2-epsilon 624 703 IPR003307 GO:0005515
Gso19g2025 705 SUPERFAMILY Trimeric LpxA-like enzymes 264 426 IPR011004 -
Gso19g2025 705 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 7 704 - -
Gso19g2025 705 MobiDBLite consensus disorder prediction 504 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2025 Gso-Chr19 48820729 48832421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2025 1 696 Eukaryotic Initiation Factors Gene Family AT2G34970 64.525 0.0 927
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2025 K03240 - gmx:100788809 1395.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2025 19 48820729 48832421 Gso3g2065 3 46014012 46023481 GST