Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1997 ATGTGTTTGCCAGAGGGAGAAAGAGGCATGGCACTAGAAGCAGTAGTATATCCCCAACCTCAAGACCCGTTTGGCTACGGAATCAAAGACCCTTCTTACAACTACAACAACTTGTTAGAAGGTGGTGGAGGCAACTGGGGCTTTGAAAAAGAAGAGCAAGGTTTTGTCACTTTTCTGGAGAACCAAACAGAGAATTATCCTTATGGAGAATGGAACTGTTCTCCTTCTCCACCATCCATGTTGCCTCACTTGAATGCATCAAATCCTCAGTCTTCAGAAACCAGCAACATACATAACAACTTAGATAGTTCAATTTCCACCCCTGCTCGTCCCAAAAGGCGCAGAACCAAAAGCAGGAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGGAAGCAAATGAACGAGTATCTCTCTGTTCTTCGCTCTCTAATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCTATAATTGGGGGTGCTATCAACTTTGTTAAGGAGCTGGAGCAGAGGCTGCAATTTCTTGGTGGTCAGAAAGAGAAAGAGGAGAAATCTGATGTGCCCTTTTCTGAGTTCTTCTCCTTTCCACAGTACTCAACAAGTGCCGGTGGGGGCTGCGACAATTCTACAGCCATGAGTGAGCAAAAGTGTGAGGCTCAGTCTGGCATTGCTGACATAGAAGTGACAATGGTAGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGGCCAAAGCAGCTCTTGAAAATAGTCTCTAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAATGTTACCACCACAGGGGAAATTGTCCTCTATTCTCTTAGTGTTAAGGTGGAAGAAGATTGCAAGCTGGGATCAGTGGATGAGATAGCTGCAGCAGTGTACCAAATGCTGGATAGGATTCAACAAGAGTCAATCTTGAATTAA 969 0.4448 MCLPEGERGMALEAVVYPQPQDPFGYGIKDPSYNYNNLLEGGGGNWGFEKEEQGFVTFLENQTENYPYGEWNCSPSPPSMLPHLNASNPQSSETSNIHNNLDSSISTPARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQFLGGQKEKEEKSDVPFSEFFSFPQYSTSAGGGCDNSTAMSEQKCEAQSGIADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTGEIVLYSLSVKVEEDCKLGSVDEIAAAVYQMLDRIQQESILN* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1997 322 Pfam Helix-loop-helix DNA-binding domain 128 179 IPR011598 GO:0046983
Gso19g1997 322 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 10 322 - -
Gso19g1997 322 SMART finulus 133 184 IPR011598 GO:0046983
Gso19g1997 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 178 IPR011598 GO:0046983
Gso19g1997 322 MobiDBLite consensus disorder prediction 77 107 - -
Gso19g1997 322 CDD bHLH_AtFAMA_like 130 201 - -
Gso19g1997 322 MobiDBLite consensus disorder prediction 77 125 - -
Gso19g1997 322 Gene3D - 111 195 IPR036638 GO:0046983
Gso19g1997 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 191 IPR036638 GO:0046983
Gso19g1997 322 Coils Coil 175 195 - -
Gso19g1997 322 PANTHER MAX DIMERIZATION, MAD 10 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1997 Gso-Chr19 48582352 48584480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1997 10 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.089 2.16e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso19g1997 HLH 8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1997 - - gmx:100782243 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1997 19 48582352 48584480 Gso19g1997 19 48582352 48584480 ECH
Gso19g1997 19 48582352 48584480 Gso3g2038 3 45802751 45804933 GST
Gso19g1997 19 48582352 48584480 Gso10g1428 10 40689975 40691494 PCT
Gso10g1428 10 40689975 40691494 Gso19g1997 19 48582352 48584480 PCT