Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1996 ATGAAGAAGCACATTCACATAGCCCTATTCCTCCTTCTGGTGTCACCGTTAATCCCCATCGCCGTCGCGCAGGCCCAATCCCAGCCCAATGACTTCTCCGACGCAAACCTCAACCAGTTCAGCCCCTCCATAGCCATAATCATAGTCATACTTGTCGCCGCGCTTTTCCTCATGGCTTTTTTCTCCATCTACGTACGCCACTGCGCCGATTCCCCTTCCACCACCGTTAGCCCTCTCACTACCGCACGCTCCCGGAGGGCCGCGCGTGGGCTTGACCCAGCTGTGATCCAAACATTCCCAATCCTCGAATACTCCGAGGTTAAGATCCACAAAATCGGAAAAGAAGCGTTGGAATGCGCGGTGTGTTTGTGCGAGTTCGAGGACACCGAAACGCTGCGTTTGATCCCCAAGTGCGATCACGTTTTCCACCCCGAGTGCATCGACGAGTGGTTGGGCTCCCACACCACGTGTCCCGTGTGCCGCGCCAACCTCGTTCCCACCGACTCCGAGGATGCTATTGCTAACGGTAACGCTAACGGCGTTGTTCCAGTTCCGGAGACGTTTACGCGAGACATTGAAGCCCAAAACGACGCCGTGGAAGCGGCGCCAGAGCAGCAGAACGCGGAGGCTGACCCAGTCTTACCTGAACCGGAAGTAGTTTCCCTGGACAAAACACTGAACCGGAACCGCACGCGAGGGTCTCGGTCGAACCGGCCTCGGAGGTTTCCAAGGTCGCACTCGACCGGGCACTCGCTGGTCCAACCGGGAGAAAACACTGACCGGTTCACTTTGAGGTTGCCTTTGGAGGTGAGGAAGCAATTAATAAACCGCCAATTGCAACGTGCGAGTAGCTTGATCGTGTTACCCAGGGAAGGTAGTTTGCGGCAGGGTTACCGAACCGGAGGAGAAGGGAGTAGTAGGGGGAAGATTTCGAGGCGGTTGGACCGGAGTTTGAAATCGGACCGGTGGATTTTCTCGATGGCTGCGCCCTTTTTTGCAAGGGCGTTGTCTATTAGATCGCCTAGGGTTCGAAACAATGATGTTGAAGGAACGGCGTCGTCGTCGTCGTCTTCCACCGCGCCTATCTTGCCGCCGACGGCCGTTGACTCGGCGAGGCCTCTGGTCTAA 1128 0.5656 MKKHIHIALFLLLVSPLIPIAVAQAQSQPNDFSDANLNQFSPSIAIIIVILVAALFLMAFFSIYVRHCADSPSTTVSPLTTARSRRAARGLDPAVIQTFPILEYSEVKIHKIGKEALECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPTDSEDAIANGNANGVVPVPETFTRDIEAQNDAVEAAPEQQNAEADPVLPEPEVVSLDKTLNRNRTRGSRSNRPRRFPRSHSTGHSLVQPGENTDRFTLRLPLEVRKQLINRQLQRASSLIVLPREGSLRQGYRTGGEGSSRGKISRRLDRSLKSDRWIFSMAAPFFARALSIRSPRVRNNDVEGTASSSSSSTAPILPPTAVDSARPLV* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1996 375 MobiDBLite consensus disorder prediction 199 258 - -
Gso19g1996 375 SMART ring_2 119 160 IPR001841 -
Gso19g1996 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 167 IPR013083 -
Gso19g1996 375 PANTHER RING FINGER DOMAIN-CONTAINING 1 313 - -
Gso19g1996 375 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Gso19g1996 375 SUPERFAMILY RING/U-box 118 167 - -
Gso19g1996 375 MobiDBLite consensus disorder prediction 345 375 - -
Gso19g1996 375 CDD RING-H2_EL5_like 118 161 - -
Gso19g1996 375 MobiDBLite consensus disorder prediction 345 364 - -
Gso19g1996 375 Pfam Ring finger domain 118 161 IPR001841 -
Gso19g1996 375 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 313 - -
Gso19g1996 375 MobiDBLite consensus disorder prediction 231 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1996 Gso-Chr19 48562010 48563494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1996 1 360 Rapid Response to Elicitors AT3G05200 41.707 5.90e-86 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1996 K10664 - gmx:100781706 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1996 19 48562010 48563494 Gso19g1996 19 48562010 48563494 ECH
Gso19g1996 19 48562010 48563494 Gso3g2037 3 45771473 45772931 GST
Gso19g1996 19 48562010 48563494 Gso10g1427 10 40653872 40655227 PCT
Gso10g1427 10 40653872 40655227 Gso19g1996 19 48562010 48563494 PCT