Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1982 ATGCAAGACATTTTCGGATCAGTTCGCCGATCACTGGTATTCCGCGGTTCGCCGGAGAACGAAGAATCCTCTCTTGGAGTCGGAGGAAGCCTCGTCGATAGGATCAGTTATTGTATCCGAAGTTCCAGAGTCTTCTCCAAACCCTCGACGCCGTCGCCGCCCTCCTTTCCTAAGGACGCTGCTCCTCCGATCCGATGGCGGAAAGGCGAGTTGATCGGTTGCGGCGCCTTTGGCCAAGTCTACGTTGGAATGAATCTCGATTCTGGAGAGCTTCTGGCGGTTAAACAGGTCTTGATTGCGGCAAGTAATGCTACGAAGGAGAAGGCACAGGCTCACATAAAAGAGCTTGAGGAAGAAGTTAAATTACTGAAAGACCTTTCACATCCGAACATTGTTAGATATTTGGGTACGGTCAGAGAAGAGGACACCCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCTTTCCCTGAGGCTGTAATAAGAACTTACACAAAGCAGCTACTACTTGGACTTGAGTACTTGCACAAAAATGGAATCATGCACAGAGACATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTTGTTGAGCTGGCAACCATTTCTGGTGCCAAGTCCATGAAAGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATTGCTTCTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCTCATCCGCCAATCCCTGATCATCTATCAGCTGCAGCAAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCAATTTTGAGGTCATCGGCATCCAAACTGCTGCAGCATCCCTTTGTTACTGGTGAACATATGAATTCTCTTCCTCTGTCATCTAATGTCATGGAAAATTTGGAAGCTTCTTCACCATCATGTGCCCCAAATGCGGAATCCTTCCTTTGCTGTTCAACGGTAAATCCTCTGGACTTGGGAATTAAACAGTCATGGGGAATGAGCAACGATGATGATATGTGTGTGATTGATGACAAAGAAGAGTTCTCACAGAGTGATGCCAAATACAAATCATTTATGTCAACTAATATCGAGAGTTTCAACCCAATGTCTGATCCCTCTGATGATTGGGGGGGGTGTAAATTTGATGCAAGTCCAGAACTGGAAAATAGAGGGGTTAATTTTGGCACTGATGAAAGTTACGTGCCACCTGATCAGTCAGGGGATGATGATAAGGGGCAGAAAGATTTTTCCTTTCCAGGTGTGCCATCTCTGTCAGAGGAAGATGATGAACTCACAGAGTCAAAAATTAAAGCATTTTTGGATGAGAAGGCTCTTGAACTGAAAAAATTGCAGACACCTTTATATGAAGAGTTTTACAATAGTTTAAATACATCTTGTTCTCCCAATGTGATTGAGAGCACCAGTGATGATACTGCTTGTCGAAAATATTTGAAATTACCTCCTAAAAGCAGGTCACCAAGTCGGGTACCAATTAGTACTCCGTCTAAAGCCGTTGATAATTCTGGAAGTCCTGGAAGTAATGGCCGGTCATCATCAACTGTTGGCCATGTAAATAACCATAGTCCACAGGATATTCCAGCATCTTCCCTTAATGAATGGAAAGGACTGATAGCTGACTCTCAGCAGCAGCCCAGTAGCCCAAGTCTAAGCTTTTCTGAGAGACAGAGGAAGTGGAAAGAAGAGCTCGATCAGGAGCTTGAGAGAAAGCGAGAAATGATGCGGCAGGCTGGCATGGGCGGAAAGACATCTTCACCGAAGGATCGAGCTTTAAATCGGCAGAGGGAGAAAACAAGATTTGCTTCTCCCAGTAAATAA 1977 0.4482 MQDIFGSVRRSLVFRGSPENEESSLGVGGSLVDRISYCIRSSRVFSKPSTPSPPSFPKDAAPPIRWRKGELIGCGAFGQVYVGMNLDSGELLAVKQVLIAASNATKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHCFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSAAAKDFLLKCLQKEPILRSSASKLLQHPFVTGEHMNSLPLSSNVMENLEASSPSCAPNAESFLCCSTVNPLDLGIKQSWGMSNDDDMCVIDDKEEFSQSDAKYKSFMSTNIESFNPMSDPSDDWGGCKFDASPELENRGVNFGTDESYVPPDQSGDDDKGQKDFSFPGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPNVIESTSDDTACRKYLKLPPKSRSPSRVPISTPSKAVDNSGSPGSNGRSSSTVGHVNNHSPQDIPASSLNEWKGLIADSQQQPSSPSLSFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALNRQREKTRFASPSK* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1982 658 Coils Coil 99 126 - -
Gso19g1982 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Gso19g1982 658 CDD STKc_MAPKKK 65 329 - -
Gso19g1982 658 Gene3D Transferase(Phosphotransferase) domain 1 65 359 - -
Gso19g1982 658 MobiDBLite consensus disorder prediction 438 476 - -
Gso19g1982 658 Pfam Protein kinase domain 67 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1982 658 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
Gso19g1982 658 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 613 - -
Gso19g1982 658 SUPERFAMILY Protein kinase-like (PK-like) 65 330 IPR011009 -
Gso19g1982 658 Coils Coil 609 629 - -
Gso19g1982 658 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 1 613 - -
Gso19g1982 658 MobiDBLite consensus disorder prediction 607 629 - -
Gso19g1982 658 MobiDBLite consensus disorder prediction 540 606 - -
Gso19g1982 658 MobiDBLite consensus disorder prediction 641 658 - -
Gso19g1982 658 MobiDBLite consensus disorder prediction 532 658 - -
Gso19g1982 658 SMART serkin_6 66 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1982 658 ProSiteProfiles Protein kinase domain profile. 66 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1982 Gso-Chr19 48463628 48469272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1982 1 658 MAP Kinase Kinase Kinase AT1G54960 58.596 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso19g1982 Pkinase 9.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1982 K20606 - gmx:100807537 1267.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1982 19 48463628 48469272 Gso3g2020 3 45658408 45664247 GST