Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1977 ATGTCAAACTCAAACATCACAAGTTGTGATAGTTGGAGCTTCACTACAGAGAATAATAATAATGGAGAAGATGCAGCAGCAACTGTTAAACAGCAATTGGAGATGCTTGGCCAGCTTTATAGTCCAAATTCAAACACTTCAACCACAACAAATAATAGCAATGGTGGCTCAAACGCAGATTCACAACCACCTGCTAAGAAGAAAAGAAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTCATAGCACTCTCACCAAACACCCTGGTGGCCACAAACAGGTTCATATGTGAAATATGCAACAAAGGGTTTCAAAGGGACCAAAACCTTCAATTGCACCGTCGAGGCCATAACCTACCGTGGAAGCTGAAACTGAGAACCACCACTGAAGTTCGAAAACGGGTTTATGTTTGTCCTGAACCCTCATGTGTGCATCACAACCCAGCTCGTGCACTAGGTGATCTCACTGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGACAAGAAGTGGAAATGTGAGAAGTGCTCCAAGAAATATGCTGTTCAGTCTGATTGGAAAGCCCATTCCAAAATATGCGGAACAAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGACAGTTTCGTCACCCACAGAGCTTTCTGCGATGCACTGAGTGAGGAGAACAACAAGTGCAACGAAGTGCCAAAGATGCATGGTTCAAACTTGCAACCACCAATAATTCCAAACATAGTTGCATCATTACCAATAATCAATGCCAACAATCACAAGAACCCATTTTCACTCCCACACGACCTCATGACAACAATTCCCGCAAAACCCTTCAACAACATGGCTGCAGCATTCACGAGAAGCCTTTCATCCACCTCTTCACCCTCTCAACTAAGCTCAAATTCACCAAACATTAATATGTTGGTGGAAAATGGTCTCCTTTCACCTCACATGTCCGCCACGGCATTGCTCCAAAAAGCAGCACAAATGGGTGCAACAGTGAATAGTAACAACAACAGCATGATGAGTAGTGATGAAAAAAGCTTTATTGTCACAAGCATGGCACCACCATCATATGGGATCATGAACCACAACATGCACAATGGTCAACAAGACTTGTCACAATATAATTTCAATGCGAATGGGATGGTGGATGGTGGTAGCAATAATGGCATGGGAATGGGTGGTTTGGATATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTGTCGAAGATCATAGAGCAGAACAACAGAAACAGTACTTATAATGGTGTTTTGCATGCAATGAATAATGGTAAGTCAAGTGACCCCATTGAAGGTGGTGGAACTAAAGGGAGTGAAGCTGTGAATCATGTGATGACTTTGGACTTGTTGGGGATAGGAGGTGGTGGTGGAGATGGTAATTTCTATGGTGGTGATCAACAGTCAGAAATAGCTGCTGGAGATGGAATATGGAGAAATTGGTCAAATAAGAATGCAGGGCTTGAATCATTTTCAGCAACAAACAGCACTATGTGA 1524 0.4278 MSNSNITSCDSWSFTTENNNNGEDAAATVKQQLEMLGQLYSPNSNTSTTTNNSNGGSNADSQPPAKKKRNLPGNPDPSAEVIALSPNTLVATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGDKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFVTHRAFCDALSEENNKCNEVPKMHGSNLQPPIIPNIVASLPIINANNHKNPFSLPHDLMTTIPAKPFNNMAAAFTRSLSSTSSPSQLSSNSPNINMLVENGLLSPHMSATALLQKAAQMGATVNSNNNSMMSSDEKSFIVTSMAPPSYGIMNHNMHNGQQDLSQYNFNANGMVDGGSNNGMGMGGLDMFNAILDQSKALSKIIEQNNRNSTYNGVLHAMNNGKSSDPIEGGGTKGSEAVNHVMTLDLLGIGGGGGDGNFYGGDQQSEIAAGDGIWRNWSNKNAGLESFSATNSTM* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1977 507 MobiDBLite consensus disorder prediction 36 78 - -
Gso19g1977 507 Gene3D Classic Zinc Finger 150 230 - -
Gso19g1977 507 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 40 466 - -
Gso19g1977 507 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 40 466 - -
Gso19g1977 507 Pfam Zinc-finger double-stranded RNA-binding 95 117 IPR022755 -
Gso19g1977 507 MobiDBLite consensus disorder prediction 36 64 - -
Gso19g1977 507 SUPERFAMILY beta-beta-alpha zinc fingers 94 191 IPR036236 -
Gso19g1977 507 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Gso19g1977 507 SMART c2h2final6 136 166 IPR013087 -
Gso19g1977 507 SMART c2h2final6 171 191 IPR013087 -
Gso19g1977 507 SMART c2h2final6 95 117 IPR013087 -
Gso19g1977 507 MobiDBLite consensus disorder prediction 1 23 - -
Gso19g1977 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1977 Gso-Chr19 48404144 48408888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1977 45 228 IDZ Gene Family AT5G66730 78.191 1.12e-108 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso19g1977 zf-C2H2_jaz 7.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1977 - - gmx:100806469 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1977 19 48404144 48408888 Gso19g1977 19 48404144 48408888 ECH
Gso19g1977 19 48404144 48408888 Gso3g2011 3 45559363 45563622 GST
Gso19g1977 19 48404144 48408888 Gso10g1396 10 40374577 40378704 PCT