Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso19g1977 | ATGTCAAACTCAAACATCACAAGTTGTGATAGTTGGAGCTTCACTACAGAGAATAATAATAATGGAGAAGATGCAGCAGCAACTGTTAAACAGCAATTGGAGATGCTTGGCCAGCTTTATAGTCCAAATTCAAACACTTCAACCACAACAAATAATAGCAATGGTGGCTCAAACGCAGATTCACAACCACCTGCTAAGAAGAAAAGAAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTCATAGCACTCTCACCAAACACCCTGGTGGCCACAAACAGGTTCATATGTGAAATATGCAACAAAGGGTTTCAAAGGGACCAAAACCTTCAATTGCACCGTCGAGGCCATAACCTACCGTGGAAGCTGAAACTGAGAACCACCACTGAAGTTCGAAAACGGGTTTATGTTTGTCCTGAACCCTCATGTGTGCATCACAACCCAGCTCGTGCACTAGGTGATCTCACTGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGACAAGAAGTGGAAATGTGAGAAGTGCTCCAAGAAATATGCTGTTCAGTCTGATTGGAAAGCCCATTCCAAAATATGCGGAACAAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGACAGTTTCGTCACCCACAGAGCTTTCTGCGATGCACTGAGTGAGGAGAACAACAAGTGCAACGAAGTGCCAAAGATGCATGGTTCAAACTTGCAACCACCAATAATTCCAAACATAGTTGCATCATTACCAATAATCAATGCCAACAATCACAAGAACCCATTTTCACTCCCACACGACCTCATGACAACAATTCCCGCAAAACCCTTCAACAACATGGCTGCAGCATTCACGAGAAGCCTTTCATCCACCTCTTCACCCTCTCAACTAAGCTCAAATTCACCAAACATTAATATGTTGGTGGAAAATGGTCTCCTTTCACCTCACATGTCCGCCACGGCATTGCTCCAAAAAGCAGCACAAATGGGTGCAACAGTGAATAGTAACAACAACAGCATGATGAGTAGTGATGAAAAAAGCTTTATTGTCACAAGCATGGCACCACCATCATATGGGATCATGAACCACAACATGCACAATGGTCAACAAGACTTGTCACAATATAATTTCAATGCGAATGGGATGGTGGATGGTGGTAGCAATAATGGCATGGGAATGGGTGGTTTGGATATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTGTCGAAGATCATAGAGCAGAACAACAGAAACAGTACTTATAATGGTGTTTTGCATGCAATGAATAATGGTAAGTCAAGTGACCCCATTGAAGGTGGTGGAACTAAAGGGAGTGAAGCTGTGAATCATGTGATGACTTTGGACTTGTTGGGGATAGGAGGTGGTGGTGGAGATGGTAATTTCTATGGTGGTGATCAACAGTCAGAAATAGCTGCTGGAGATGGAATATGGAGAAATTGGTCAAATAAGAATGCAGGGCTTGAATCATTTTCAGCAACAAACAGCACTATGTGA | 1524 | 0.4278 | MSNSNITSCDSWSFTTENNNNGEDAAATVKQQLEMLGQLYSPNSNTSTTTNNSNGGSNADSQPPAKKKRNLPGNPDPSAEVIALSPNTLVATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGDKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFVTHRAFCDALSEENNKCNEVPKMHGSNLQPPIIPNIVASLPIINANNHKNPFSLPHDLMTTIPAKPFNNMAAAFTRSLSSTSSPSQLSSNSPNINMLVENGLLSPHMSATALLQKAAQMGATVNSNNNSMMSSDEKSFIVTSMAPPSYGIMNHNMHNGQQDLSQYNFNANGMVDGGSNNGMGMGGLDMFNAILDQSKALSKIIEQNNRNSTYNGVLHAMNNGKSSDPIEGGGTKGSEAVNHVMTLDLLGIGGGGGDGNFYGGDQQSEIAAGDGIWRNWSNKNAGLESFSATNSTM* | 508 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso19g1977 | 507 | MobiDBLite | consensus disorder prediction | 36 | 78 | - | - | |
Gso19g1977 | 507 | Gene3D | Classic Zinc Finger | 150 | 230 | - | - | |
Gso19g1977 | 507 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 40 | 466 | - | - | |
Gso19g1977 | 507 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 40 | 466 | - | - | |
Gso19g1977 | 507 | Pfam | Zinc-finger double-stranded RNA-binding | 95 | 117 | IPR022755 | - | |
Gso19g1977 | 507 | MobiDBLite | consensus disorder prediction | 36 | 64 | - | - | |
Gso19g1977 | 507 | SUPERFAMILY | beta-beta-alpha zinc fingers | 94 | 191 | IPR036236 | - | |
Gso19g1977 | 507 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 97 | 117 | IPR013087 | - | |
Gso19g1977 | 507 | SMART | c2h2final6 | 136 | 166 | IPR013087 | - | |
Gso19g1977 | 507 | SMART | c2h2final6 | 171 | 191 | IPR013087 | - | |
Gso19g1977 | 507 | SMART | c2h2final6 | 95 | 117 | IPR013087 | - | |
Gso19g1977 | 507 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Gso19g1977 | 507 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 95 | 117 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso19g1977 | Gso-Chr19 | 48404144 | 48408888 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso19g1977 | 45 | 228 | IDZ Gene Family | AT5G66730 | 78.191 | 1.12e-108 | 331 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Gso19g1977 | zf-C2H2_jaz | 7.4e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso19g1977 | - | - | gmx:100806469 | 952.584 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso19g1977 | 19 | 48404144 | 48408888 | Gso19g1977 | 19 | 48404144 | 48408888 | ECH | |
Gso19g1977 | 19 | 48404144 | 48408888 | Gso3g2011 | 3 | 45559363 | 45563622 | GST | |
Gso19g1977 | 19 | 48404144 | 48408888 | Gso10g1396 | 10 | 40374577 | 40378704 | PCT |